Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p42470 Brassica napus HOM05D001676 ORTHO05D027484 3.1e-18 94.0 44 100.0
BcaC03g16419 Brassica carinata HOM05D001676 ORTHO05D027484 3.2e-15 84.0 39 100.0
BolC2t10287H Brassica oleracea HOM05D001676 ORTHO05D027484 3.0e-13 77.4 38 94.7
BolC3t16813H Brassica oleracea HOM05D001676 ORTHO05D027484 3.0e-13 77.4 38 94.7
Sp2g08120 Schrenkiella parvula HOM05D001676 ORTHO05D001539 1.1e-10 68.9 38 78.9
Thhalv10003134m.g Eutrema salsugineum HOM05D001676 ORTHO05D001539 2.4e-10 67.8 38 78.9
A06p47920 Brassica napus HOM05D001676 ORTHO05D001539 1.2e-09 65.5 38 76.3
BraA06t27662Z Brassica rapa HOM05D001676 ORTHO05D001539 1.2e-09 65.5 38 76.3
A02p27760 Brassica napus HOM05D001676 ORTHO05D001539 1.6e-09 65.1 38 71.1
BraA02t07817Z Brassica rapa HOM05D001676 ORTHO05D001539 1.6e-09 65.1 38 71.1
BcaC06g31710 Brassica carinata HOM05D001676 ORTHO05D001539 3.5e-09 63.9 38 73.7
BcaB07g30585 Brassica carinata HOM05D001676 ORTHO05D001539 4.5e-09 63.5 38 68.4
BcaC03g16572 Brassica carinata HOM05D000411 ORTHO05D001539 4.5e-09 63.5 38 68.4
C02p43860 Brassica napus HOM05D001676 ORTHO05D001539 4.5e-09 63.5 38 68.4
BolC2t10432H Brassica oleracea HOM05D001676 ORTHO05D001539 4.5e-09 63.5 38 68.4
FvH4_4g03880 Fragaria vesca HOM05D001676 ORTHO05D001539 7.7e-09 62.8 38 73.7
RcHm_v2.0_Chr4g0393911 Rosa chinensis HOM05D001676 ORTHO05D001539 7.7e-09 62.8 38 73.7
SGA_v2.0_scaffold43G16224 Striga asiatica HOM05D001676 ORTHO05D001539 1.0e-08 62.4 38 71.1
AL8G17080 Arabidopsis lyrata HOM05D001676 ORTHO05D001539 1.3e-08 62.0 38 71.1
AT5G43310 Arabidopsis thaliana HOM05D001676 ORTHO05D001539 1.3e-08 62.0 38 71.1
CARHR180420 Cardamine hirsuta HOM05D001676 ORTHO05D001539 1.3e-08 62.0 38 71.1
FAN12G4001 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.7e-08 61.6 38 71.1
MD13G1215700 Malus domestica HOM05D001676 ORTHO05D001539 1.7e-08 61.6 38 71.1
MD16G1220700 Malus domestica HOM05D001676 ORTHO05D001539 1.7e-08 61.6 38 71.1
THA.LOC104801554 Tarenaya hassleriana HOM05D001676 ORTHO05D001539 1.7e-08 61.6 38 71.1
FAN17G1280 Fragaria x ananassa HOM05D001676 ORTHO05D001539 2.2e-08 61.2 38 73.7
Prupe.1G041100 Prunus persica HOM05D001676 ORTHO05D001539 2.2e-08 61.2 38 71.1
BcaC06g34663 Brassica carinata HOM05D001676 ORTHO05D001539 2.9e-08 60.8 39 74.4
FAN22G0824 Fragaria x ananassa HOM05D001676 ORTHO05D001539 2.9e-08 60.8 38 71.1
HPP92_005129 Vanilla planifolia HOM05D001676 ORTHO05D001539 3.8e-08 60.5 40 67.5
GSVIVG01027840001 Vitis vinifera HOM05D001676 ORTHO05D001539 5.0e-08 60.1 38 68.4
Carub.0008s0535 Capsella rubella HOM05D001676 ORTHO05D001539 6.5e-08 59.7 37 70.3
Migut.G00505 Erythranthe guttata HOM05D001676 ORTHO05D001539 6.5e-08 59.7 38 63.2
Glyma.02G004200 Glycine max HOM05D001676 ORTHO05D001539 6.5e-08 59.7 38 68.4
Thecc.04G257700 Theobroma cacao HOM05D001676 ORTHO05D001539 6.5e-08 59.7 38 71.1
TAR633G1347 Trochodendron aralioides HOM05D001676 ORTHO05D001539 6.5e-08 59.7 38 68.4
Glyma.10G004100 Glycine max HOM05D001676 ORTHO05D001539 8.5e-08 59.3 38 65.8
Medtr1g075740 Medicago truncatula HOM05D001676 ORTHO05D001539 8.5e-08 59.3 38 65.8
SalBow3G4141 Salvia bowleyana HOM05D001676 ORTHO05D001539 8.5e-08 59.3 38 63.2
Actinidia20816 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.1e-07 58.9 38 65.8
arahy.Tifrunner.gnm1.ann1.JB2S8U Arachis hypogaea HOM05D001676 ORTHO05D001539 1.1e-07 58.9 38 68.4
arahy.Tifrunner.gnm1.ann1.MJS5SD Arachis hypogaea HOM05D001676 ORTHO05D001539 1.1e-07 58.9 38 68.4
C07p25900 Brassica napus HOM05D001676 ORTHO05D001539 1.1e-07 58.9 39 71.8
BolC7t43111H Brassica oleracea HOM05D001676 ORTHO05D001539 1.1e-07 58.9 39 71.8
Cc03_g05670 Coffea canephora HOM05D001676 ORTHO05D001539 1.1e-07 58.9 38 63.2
CSS0010928 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 1.5e-07 58.5 38 65.8
CANSAT78G2335 Cannabis sativa HOM05D001676 ORTHO05D001539 1.5e-07 58.5 38 68.4
Migut.N00283 Erythranthe guttata HOM05D001676 ORTHO05D001539 1.9e-07 58.2 38 63.2
Manes.03G163000 Manihot esculenta HOM05D001676 ORTHO05D001539 1.9e-07 58.2 38 65.8
CSS0046642 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 2.5e-07 57.8 38 63.2
Psat6g117680 Pisum sativum HOM05D001676 ORTHO05D001539 2.5e-07 57.8 38 60.5
Sc13g0005790 Simmondsia chinensis HOM05D001676 ORTHO05D001539 2.5e-07 57.8 38 63.2
PSO210G1446 Papaver somniferum HOM05D001676 ORTHO05D001539 3.2e-07 57.4 38 65.8
PSO832G0756 Papaver somniferum HOM05D001676 ORTHO05D001539 3.2e-07 57.4 38 65.8
EL10Ac3g04990 Beta vulgaris HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 60.5
AUR62002154 Chenopodium quinoa HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 60.5
AUR62015553 Chenopodium quinoa HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 60.5
Ca_09855_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 63.2
Lsat_1_v5_gn_5_73160 Lactuca sativa HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 60.5
TPR.G10081 Trifolium pratense HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 65.8
TPR.G25163 Trifolium pratense HOM05D001676 ORTHO05D001539 4.2e-07 57.0 37 64.9
TAR362G0282 Trochodendron aralioides HOM05D001676 ORTHO05D001539 4.2e-07 57.0 38 65.8
unitig_0.g2241 Utricularia gibba HOM05D001676 ORTHO05D001539 4.2e-07 57.0 37 62.2
Atru.chr4.2028 Acer truncatum HOM05D001676 ORTHO05D001539 5.5e-07 56.6 38 63.2
arahy.Tifrunner.gnm1.ann1.7F0WTK Arachis hypogaea HOM05D001676 ORTHO05D001539 5.5e-07 56.6 38 63.2
arahy.Tifrunner.gnm1.ann1.G3BCTI Arachis hypogaea HOM05D001676 ORTHO05D001539 5.5e-07 56.6 38 63.2
MSTRG.21919 Avicennia marina HOM05D001676 ORTHO05D001539 5.5e-07 56.6 38 60.5
HPP92_008597 Vanilla planifolia HOM05D001676 ORTHO05D001539 5.5e-07 56.6 38 65.8
Aa31LG5G3800 Aethionema arabicum HOM05D001676 ORTHO05D001539 7.2e-07 56.2 38 63.2
Ciclev10004168m.g Citrus clementina HOM05D001676 ORTHO05D001539 7.2e-07 56.2 38 63.2
ECA233G1832 Erigeron canadensis HOM05D001676 ORTHO05D001539 7.2e-07 56.2 38 60.5
MBI07_g31098_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 7.2e-07 56.2 37 64.9
MBI10_g13802_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 7.2e-07 56.2 40 62.5
TWI09G0719 Tripterygium wilfordii HOM05D001676 ORTHO05D001539 7.2e-07 56.2 38 63.2
Cfa014719 Carpinus fangiana HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 57.9
Ca_12150_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Haze_11401 Corylus avellana HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 57.9
Gohir.A02G040000 Gossypium hirsutum HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Gohir.A09G229166 Gossypium hirsutum HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Gohir.D02G046100 Gossypium hirsutum HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Gohir.D09G230200 Gossypium hirsutum HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Gorai.005G050900 Gossypium raimondii HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Gorai.006G252900 Gossypium raimondii HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Lj5g0006991 Lotus japonicus HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Lj6g0007164 Lotus japonicus HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 65.8
Medtr1g041465 Medicago truncatula HOM05D001676 ORTHO05D001539 9.4e-07 55.8 37 62.2
PGR004G1623 Punica granatum HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
QL06p018506 Quercus lobata HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 60.5
Rhsim04G0177100 Rhododendron simsii HOM05D001676 ORTHO05D001539 9.4e-07 55.8 38 63.2
Sabra08G0128300 Salix brachista HOM05D001676 ORTHO05D001539 9.4e-07 55.8 37 73.0
Aqoxy5G00197 Aquilegia oxysepala HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
CAN.G220.6 Capsicum annuum HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
Nitab4.5_0000044g0420 Nicotiana tabacum HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 57.9
Nitab4.5_0000778g0070 Nicotiana tabacum HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 57.9
Oeu028209.2 Olea europaea HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
Phvul.007G277200 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
Solyc09g090270.3 Solanum lycopersicum HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
Sopen09g033170 Solanum pennellii HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 60.5
vmacro08509 Vaccinium macrocarpon HOM05D001676 ORTHO05D001539 1.2e-06 55.5 38 63.2
CDE04G2803 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 1.6e-06 55.1 38 60.5
COL.COLO4_15893 Corchorus olitorius HOM05D001676 ORTHO05D001539 1.6e-06 55.1 38 65.8
Duzib151G0984 Durio zibethinus HOM05D001676 ORTHO05D001539 1.6e-06 55.1 37 62.2
Psat6g244160 Pisum sativum HOM05D001676 ORTHO05D001539 1.6e-06 55.1 37 62.2
Potri.008G168300 Populus trichocarpa HOM05D001676 ORTHO05D001539 1.6e-06 55.1 37 73.0
Actinidia35795 Actinidia chinensis HOM05D001676 ORTHO05D001539 2.1e-06 54.7 38 63.2
Cpa.g.sc380.6 Carica papaya HOM05D001676 ORTHO05D001539 2.1e-06 54.7 38 63.2
CiPaw.01G182500 Carya illinoinensis HOM05D001676 ORTHO05D001539 2.1e-06 54.7 38 57.9
Ciclev10007365m.g Citrus clementina HOM05D001676 ORTHO05D001539 2.1e-06 54.7 37 59.5
CDE05G0956 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 3.6e-06 53.9 38 63.2
DCAR_002314 Daucus carota HOM05D001676 ORTHO05D001539 3.6e-06 53.9 36 58.3
Potri.010G070200 Populus trichocarpa HOM05D001676 ORTHO05D001539 3.6e-06 53.9 37 67.6
PGSC0003DMG400017216 Solanum tuberosum HOM05D001676 ORTHO05D001539 3.6e-06 53.9 38 57.9
MELO3C016717.2 Cucumis melo HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 57.9
CsaV3_4G033910 Cucumis sativus L. HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 57.9
Duzib052G0282 Durio zibethinus HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 60.5
Eucgr.H00149 Eucalyptus grandis HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 60.5
Oeu005088.4 Olea europaea HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 57.9
Os07g0445600 Oryza sativa ssp. japonica HOM05D001676 ORTHO05D001539 4.7e-06 53.5 38 60.5
CSS0046202 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 6.1e-06 53.1 38 63.2
CiPaw.02G110700 Carya illinoinensis HOM05D001676 ORTHO05D001539 6.1e-06 53.1 38 55.3
Lj6C633G10 Lonicera japonica HOM05D001676 ORTHO05D001539 6.1e-06 53.1 38 60.5
Hund11899 Selenicereus undatus HOM05D001676 ORTHO05D001539 6.1e-06 53.1 38 55.3
Atru.chr2.2752 Acer truncatum HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 57.9
CDE07G1795 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 57.9
Dinv29846 Davidia involucrata HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 57.9
HanXRQChr17g0565931 Helianthus annuus HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 52.6
Manes.15G042200 Manihot esculenta HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 60.5
Sed0003515 Sechium edule HOM05D001676 ORTHO05D001539 8.0e-06 52.8 38 57.9


User provided reference genes

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