Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 2.9e-43 178.7 133 100.0
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 2.9e-43 178.7 133 100.0
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 5.5e-42 174.5 133 93.2
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 7.2e-42 174.1 133 98.5
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 7.2e-42 174.1 133 98.5
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 1.1e-39 166.8 133 88.7
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 1.1e-39 166.8 131 89.3
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 5.7e-39 164.5 131 87.0
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 6.5e-35 151.0 129 80.6
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 5.5e-34 147.9 127 83.5
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.2e-33 146.7 129 91.5
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 1.5e-31 139.8 131 73.3
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 5.7e-31 137.9 129 79.1
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 1.7e-30 136.3 129 82.2
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 5.2e-24 114.8 139 64.0
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 1.5e-23 113.2 143 58.7
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 2.8e-22 109.0 136 63.2
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 6.3e-22 107.8 137 63.5
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.1e-21 107.1 136 62.5
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 3.1e-21 105.5 137 67.9
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 3.1e-21 105.5 137 67.9
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 5.4e-21 104.8 129 67.4
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 1.6e-20 103.2 129 67.4
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.6e-20 103.2 139 64.0
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 2.0e-20 102.8 136 69.1
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 2.7e-20 102.4 139 58.3
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 4.5e-20 101.7 130 67.7
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 7.7e-20 100.9 141 61.0
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 7.7e-20 100.9 131 61.1
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 7.7e-20 100.9 138 67.4
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 1.0e-19 100.5 138 62.3
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 1.0e-19 100.5 130 56.2
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 1.3e-19 100.1 131 67.9
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 1.3e-19 100.1 131 58.0
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 2.3e-19 99.4 119 69.7
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 2.9e-19 99.0 133 60.9
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 3.8e-19 98.6 131 59.5
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 5.0e-19 98.2 133 61.7
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 8.6e-19 97.4 133 59.4
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 8.6e-19 97.4 131 56.5
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 8.6e-19 97.4 130 69.2
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 1.5e-18 96.7 128 63.3
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 1.9e-18 96.3 127 61.4
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 1.9e-18 96.3 130 61.5
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 2.5e-18 95.9 147 51.7
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 5.5e-18 94.7 139 57.6
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 7.2e-18 94.4 131 62.6
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 9.5e-18 94.0 142 60.6
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 9.5e-18 94.0 127 64.6
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 1.2e-17 93.6 134 62.7
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 1.6e-17 93.2 138 61.6
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 2.8e-17 92.4 136 66.9
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 3.6e-17 92.0 140 57.9
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 4.7e-17 91.7 128 68.0
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 4.7e-17 91.7 138 55.8
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 1.0e-16 90.5 130 67.7
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 1.0e-16 90.5 140 57.1
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 1.0e-16 90.5 143 54.5
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 1.4e-16 90.1 137 65.0
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 3.0e-16 89.0 137 64.2
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 4.0e-16 88.6 130 55.4
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 4.0e-16 88.6 137 61.3
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 6.8e-16 87.8 130 63.8
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 6.8e-16 87.8 130 63.8
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 6.8e-16 87.8 137 53.3
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 6.8e-16 87.8 134 64.2
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 8.9e-16 87.4 138 55.8
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 1.2e-15 87.0 138 65.2
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 2.6e-15 85.9 127 64.6
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 4.4e-15 85.1 130 66.9
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 9.8e-15 84.0 135 55.6
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 9.8e-15 84.0 135 55.6
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 3.7e-14 82.0 129 69.0
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 4.9e-14 81.6 139 64.7
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 8.3e-14 80.9 136 63.2
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 1.1e-13 80.5 137 54.7
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 1.4e-13 80.1 132 62.9
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 2.7e-12 75.9 134 63.4
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 7.8e-12 74.3 102 68.6
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 1.0e-11 73.9 129 64.3
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 1.3e-11 73.6 161 53.4
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 5.0e-11 71.6 130 61.5
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 6.6e-11 71.2 123 50.4
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 2.5e-10 69.3 101 68.3
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 2.1e-09 66.2 117 53.0
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 3.6e-09 65.5 101 69.3
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 1.8e-08 63.2 89 71.9
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 5.2e-08 61.6 163 44.8
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 5.8e-07 58.2 84 56.0
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 5.8e-07 58.2 87 73.6
Thecc.08G167500 Theobroma cacao HOM05D007581 ORTHO05D009250 7.5e-07 57.8 66 68.2
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 3.7e-06 55.5 93 57.0
AUR62038551 Chenopodium quinoa HOM05D007581 ORTHO05D009250 6.4e-06 54.7 122 30.3


User provided reference genes

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