Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 4.7e-70 267.7 130 100.0
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.5e-47 193.0 116 84.5
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.9e-47 192.6 90 100.0
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 6.4e-19 97.8 46 93.5
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 4.2e-18 95.1 46 89.1
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 4.2e-18 95.1 46 89.1
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.6e-17 93.2 46 87.0
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.6e-17 93.2 46 87.0
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 6.0e-17 91.3 54 77.8
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 6.0e-17 91.3 46 84.8
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 3.9e-16 88.6 45 86.7
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 5.1e-16 88.2 45 86.7
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 5.1e-16 88.2 45 86.7
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 1.1e-15 87.0 46 82.6
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 1.1e-13 80.5 39 87.2
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 2.4e-13 79.3 43 79.1
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 2.4e-13 79.3 43 79.1
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 6.9e-13 77.8 40 82.5
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.2e-12 77.0 59 57.6
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.2e-12 77.0 42 78.6
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 1.5e-12 76.6 45 71.1
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 1.5e-12 76.6 43 76.7
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.0e-12 76.3 39 82.1
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 2.0e-12 76.3 40 80.0
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 2.6e-12 75.9 37 83.8
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 2.6e-12 75.9 37 83.8
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 2.6e-12 75.9 37 83.8
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 2.6e-12 75.9 45 71.1
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-12 75.9 45 71.1
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-12 75.9 45 71.1
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-12 75.9 45 71.1
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 2.6e-12 75.9 43 74.4
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 3.4e-12 75.5 43 74.4
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 3.4e-12 75.5 39 82.1
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 3.4e-12 75.5 38 81.6
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 3.4e-12 75.5 43 74.4
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 3.4e-12 75.5 42 76.2
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 4.4e-12 75.1 46 71.7
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.4e-12 75.1 46 71.7
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.4e-12 75.1 46 71.7
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 4.4e-12 75.1 40 77.5
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 4.4e-12 75.1 42 76.2
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 4.4e-12 75.1 42 73.8
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 5.8e-12 74.7 37 83.8
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 5.8e-12 74.7 37 83.8
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 5.8e-12 74.7 42 76.2
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 5.8e-12 74.7 42 73.8
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 7.6e-12 74.3 42 81.0
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 7.6e-12 74.3 42 73.8
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 7.6e-12 74.3 45 68.9
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 7.6e-12 74.3 42 73.8
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 7.6e-12 74.3 37 81.1
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 7.6e-12 74.3 40 77.5
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 7.6e-12 74.3 37 81.1
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 9.9e-12 73.9 38 81.6
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-11 73.6 45 68.9
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-11 73.6 45 68.9
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 1.3e-11 73.6 37 81.1
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.3e-11 73.6 37 81.1
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 1.7e-11 73.2 39 76.9
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 2.2e-11 72.8 36 83.3
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 2.2e-11 72.8 36 83.3
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.2e-11 72.8 36 83.3
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 2.2e-11 72.8 37 83.8
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 2.2e-11 72.8 37 78.4
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 2.2e-11 72.8 39 76.9
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 2.9e-11 72.4 36 80.6
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 3.8e-11 72.0 36 83.3
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 3.8e-11 72.0 39 76.9
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 4.9e-11 71.6 36 80.6
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 6.4e-11 71.2 36 80.6
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 6.4e-11 71.2 36 80.6
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 8.4e-11 70.9 43 74.4
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 8.4e-11 70.9 35 85.7
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 8.4e-11 70.9 36 83.3
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 8.4e-11 70.9 58 55.2
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 8.4e-11 70.9 39 74.4
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 8.4e-11 70.9 40 72.5
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 8.4e-11 70.9 40 72.5
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 8.4e-11 70.9 40 72.5
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 8.4e-11 70.9 40 80.0
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 1.4e-10 70.1 43 74.4
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 1.9e-10 69.7 36 77.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 1.9e-10 69.7 37 73.0
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 1.9e-10 69.7 41 65.9
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 3.2e-10 68.9 37 75.7
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 5.4e-10 68.2 66 47.0
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 7.1e-10 67.8 37 73.0
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 9.3e-10 67.4 36 80.6
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 6.0e-09 64.7 58 51.7
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 6.0e-09 64.7 40 65.0
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 6.0e-09 64.7 36 77.8
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 1.3e-08 63.5 36 72.2
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 1.7e-08 63.2 36 66.7
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 8.7e-08 60.8 32 71.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.1e-07 60.5 29 82.8
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 1.6e-06 56.6 31 74.2


User provided reference genes

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