Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 2.2e-18 94.7 52 100.0
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 2.2e-18 94.7 52 100.0
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 9.1e-09 62.8 71 62.0
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 9.1e-09 62.8 71 62.0
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 9.1e-09 62.8 71 62.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.2e-08 62.4 70 61.4
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 2.7e-08 61.2 71 60.6
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 3.5e-08 60.8 70 60.0
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 3.5e-08 60.8 70 60.0
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 3.5e-08 60.8 70 60.0
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 3.5e-08 60.8 70 60.0
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 3.5e-08 60.8 70 60.0
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.5e-08 60.5 71 60.6
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.5e-08 60.5 71 60.6
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.5e-08 60.5 71 60.6
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 1.3e-07 58.9 70 58.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.7e-07 58.5 70 58.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.7e-07 58.5 70 58.6
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 3.8e-07 57.4 71 59.2
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 5.0e-07 57.0 70 58.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 5.0e-07 57.0 70 58.6
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 5.0e-07 57.0 70 58.6
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 5.0e-07 57.0 70 58.6
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 5.0e-07 57.0 70 58.6
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.5e-06 55.5 71 57.7
BraA02t07598Z Brassica rapa HOM05D008204 ORTHO05D010378 1.9e-06 55.1 43 79.1
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 2.5e-06 54.7 71 56.3
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 2.5e-06 54.7 71 56.3
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 3.2e-06 54.3 70 55.7
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 5.5e-06 53.5 71 56.3


User provided reference genes

Program Settings