Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p41080 Brassica napus HOM05D001332 ORTHO05D001894 4.5e-36 154.1 78 100.0
BolC2t10117H Brassica oleracea HOM05D001332 ORTHO05D001894 2.1e-33 145.2 78 94.9
A02p25760 Brassica napus HOM05D001332 ORTHO05D001894 2.2e-27 125.2 71 91.5
BcaC05g24455 Brassica carinata HOM05D001332 ORTHO05D001894 1.8e-16 89.0 72 65.3
C05p02480 Brassica napus HOM05D001332 ORTHO05D001894 1.8e-16 89.0 72 65.3
BolC5t29027H Brassica oleracea HOM05D001332 ORTHO05D001894 1.8e-16 89.0 72 65.3
Sp1g03100 Schrenkiella parvula HOM05D001332 ORTHO05D001894 5.2e-16 87.4 56 78.6
BcaC07g36921 Brassica carinata HOM05D001332 ORTHO05D001894 6.8e-16 87.0 72 62.5
Thhalv10008953m.g Eutrema salsugineum HOM05D001332 ORTHO05D001894 6.8e-16 87.0 72 63.9
AL1G13890 Arabidopsis lyrata HOM05D001332 ORTHO05D001894 2.0e-15 85.5 72 63.9
A10p02690 Brassica napus HOM05D001332 ORTHO05D001894 2.6e-15 85.1 72 62.5
BraA10t42538Z Brassica rapa HOM05D001332 ORTHO05D001894 2.6e-15 85.1 72 62.5
CARHR003620 Cardamine hirsuta HOM05D001332 ORTHO05D001894 4.4e-15 84.3 72 62.5
AT1G04290 Arabidopsis thaliana HOM05D001332 ORTHO05D001894 2.9e-14 81.6 72 61.1
Carub.0001s0348 Capsella rubella HOM05D001332 ORTHO05D001894 1.4e-13 79.3 55 74.5
THA.LOC104819478 Tarenaya hassleriana HOM05D001332 ORTHO05D001894 2.4e-13 78.6 72 56.9
PSO210G2973 Papaver somniferum HOM05D001332 ORTHO05D001894 4.1e-13 77.8 77 53.2
PSO210G4437 Papaver somniferum HOM05D001332 ORTHO05D001894 4.1e-13 77.8 77 53.2
Duzib147G0745 Durio zibethinus HOM05D001332 ORTHO05D001894 7.0e-13 77.0 56 67.9
TAR628G0149 Trochodendron aralioides HOM05D001332 ORTHO05D001894 1.6e-12 75.9 77 53.2
CDE04G1088 Ceratophyllum demersum HOM05D001332 ORTHO05D001894 2.0e-12 75.5 56 67.9
Duzib264G0962 Durio zibethinus HOM05D001332 ORTHO05D001894 4.6e-12 74.3 56 66.1
Eucgr.I00015 Eucalyptus grandis HOM05D001332 ORTHO05D001894 4.6e-12 74.3 73 54.8
Manes.13G153200 Manihot esculenta HOM05D001332 ORTHO05D001894 4.6e-12 74.3 56 66.1
Potri.004G134066 Populus trichocarpa HOM05D001332 ORTHO05D001894 5.9e-12 73.9 56 66.1
vmacro17790 Vaccinium macrocarpon HOM05D001332 ORTHO05D001894 5.9e-12 73.9 74 54.1
Gohir.A11G058700 Gossypium hirsutum HOM05D001332 ORTHO05D001894 7.8e-12 73.6 55 65.5
Sabra04G0084100 Salix brachista HOM05D001332 ORTHO05D001894 7.8e-12 73.6 67 58.2
Aqoxy6G00133 Aquilegia oxysepala HOM05D001332 ORTHO05D001894 1.0e-11 73.2 77 48.1
PGR119G0336 Punica granatum HOM05D001332 ORTHO05D001894 1.0e-11 73.2 73 52.1
Thecc.01G147500 Theobroma cacao HOM05D001332 ORTHO05D001894 1.3e-11 72.8 56 60.7
Ciclev10026677m.g Citrus clementina HOM05D001332 ORTHO05D001894 2.3e-11 72.0 54 66.7
Aa31LG1G20550 Aethionema arabicum HOM05D000923 ORTHO05D000720 2.9e-11 71.6 72 54.2
Atru.chr3.1473 Acer truncatum HOM05D001332 ORTHO05D001894 5.0e-11 70.9 77 50.6
Gorai.007G067900 Gossypium raimondii HOM05D001332 ORTHO05D001894 6.6e-11 70.5 55 61.8
Rhsim08G0128700 Rhododendron simsii HOM05D001332 ORTHO05D001894 6.6e-11 70.5 67 52.2
Aa31LG2G2660 Aethionema arabicum HOM05D001332 ORTHO05D001894 8.6e-11 70.1 72 47.2
Nn5g27745 Nelumbo nucifera HOM05D001332 ORTHO05D001894 8.6e-11 70.1 77 50.6
GSVIVG01000239001 Vitis vinifera HOM05D001332 ORTHO05D001894 8.6e-11 70.1 56 62.5
CiPaw.16G119200 Carya illinoinensis HOM05D001332 ORTHO05D001894 1.1e-10 69.7 56 60.7
Gohir.D11G062900 Gossypium hirsutum HOM05D001332 ORTHO05D001894 1.5e-10 69.3 55 61.8
QL10p037230 Quercus lobata HOM05D001332 ORTHO05D001894 1.9e-10 68.9 50 68.0
QL10p038097 Quercus lobata HOM05D001332 ORTHO05D001894 1.9e-10 68.9 50 68.0
SEGI_17469 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 1.9e-10 68.9 59 61.0
Actinidia36584 Actinidia chinensis HOM05D001332 ORTHO05D001894 2.5e-10 68.6 68 52.9
TWI31G0340 Tripterygium wilfordii HOM05D001332 ORTHO05D001894 2.5e-10 68.6 71 52.1
Haze_19350 Corylus avellana HOM05D001332 ORTHO05D001894 3.3e-10 68.2 50 66.0
CSS0000159 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 4.3e-10 67.8 51 62.7
Nn1g08391 Nelumbo nucifera HOM05D001332 ORTHO05D001894 4.3e-10 67.8 59 59.3
Nitab4.5_0006242g0010 Nicotiana tabacum HOM05D001332 ORTHO05D001894 5.6e-10 67.4 51 64.7
SEGI_33501 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 5.6e-10 67.4 72 52.8
Cpa.g.sc138.30 Carica papaya HOM05D001332 ORTHO05D001894 7.3e-10 67.0 77 48.1
FvH4_3g11670 Fragaria vesca HOM05D001332 ORTHO05D001894 9.5e-10 66.6 50 64.0
FAN16G1064 Fragaria x ananassa HOM05D001332 ORTHO05D001894 9.5e-10 66.6 50 64.0
MD05G1260500 Malus domestica HOM05D001332 ORTHO05D001894 9.5e-10 66.6 50 64.0
Nn5g27744 Nelumbo nucifera HOM05D001332 ORTHO05D001894 9.5e-10 66.6 65 50.8
EL10Ac4g09746 Beta vulgaris HOM05D001332 ORTHO05D001894 1.6e-09 65.9 68 50.0
Dinv04535 Davidia involucrata HOM05D001332 ORTHO05D001894 1.6e-09 65.9 54 59.3
Lj4A820T48 Lonicera japonica HOM05D001332 ORTHO05D001894 1.6e-09 65.9 54 61.1
Prupe.4G105000 Prunus persica HOM05D001332 ORTHO05D001894 1.6e-09 65.9 50 64.0
TWI31G0984 Tripterygium wilfordii HOM05D001332 ORTHO05D001894 1.6e-09 65.9 67 58.2
BcaC07g36919 Brassica carinata HOM05D001332 ORTHO05D001894 2.1e-09 65.5 58 60.3
A08p37010 Brassica napus HOM05D001332 ORTHO05D001894 2.1e-09 65.5 58 60.3
C08p01000 Brassica napus HOM05D001332 ORTHO05D001894 2.1e-09 65.5 58 60.3
BolC8t46900H Brassica oleracea HOM05D001332 ORTHO05D001894 2.1e-09 65.5 58 60.3
BraA08t35601Z Brassica rapa HOM05D001332 ORTHO05D001894 2.1e-09 65.5 58 60.3
CAN.G5.9 Capsicum annuum HOM05D001332 ORTHO05D001894 2.1e-09 65.5 52 63.5
Prupe.5G159500 Prunus persica HOM05D001332 ORTHO05D001894 2.1e-09 65.5 53 60.4
PGR102G3087 Punica granatum HOM05D001332 ORTHO05D001894 2.1e-09 65.5 56 58.9
Duzib264G1205 Durio zibethinus HOM05D001332 ORTHO05D001894 2.8e-09 65.1 55 54.5
Prupe.4G104800 Prunus persica HOM05D001332 ORTHO05D001894 2.8e-09 65.1 50 64.0
PGSC0003DMG400023081 Solanum tuberosum HOM05D001332 ORTHO05D001894 3.6e-09 64.7 49 65.3
unitig_899.g14978 Utricularia gibba HOM05D000916 ORTHO05D008340 3.6e-09 64.7 48 66.7
Gorai.011G121500 Gossypium raimondii HOM05D001332 ORTHO05D001894 4.7e-09 64.3 54 64.8
PSO724G0406 Papaver somniferum HOM05D001332 ORTHO05D001894 4.7e-09 64.3 77 45.5
Peaxi162Scf00525g00618 Petunia axillaris HOM05D001332 ORTHO05D001894 4.7e-09 64.3 71 49.3
Sc16g0009830 Simmondsia chinensis HOM05D001332 ORTHO05D001894 4.7e-09 64.3 73 47.9
Solyc09g005390.3 Solanum lycopersicum HOM05D001332 ORTHO05D001894 4.7e-09 64.3 49 63.3
Sopen09g001340 Solanum pennellii HOM05D001332 ORTHO05D001894 4.7e-09 64.3 49 63.3
CANSAT54G2298 Cannabis sativa HOM05D001332 ORTHO05D001894 6.2e-09 63.9 48 66.7
Gohir.A10G157432 Gossypium hirsutum HOM05D001332 ORTHO05D001894 6.2e-09 63.9 54 63.0
Thecc.01G147300 Theobroma cacao HOM05D001332 ORTHO05D001894 6.2e-09 63.9 55 54.5
CANSAT54G1716 Cannabis sativa HOM05D001332 ORTHO05D001894 8.0e-09 63.5 49 61.2
Migut.H02538 Erythranthe guttata HOM05D001332 ORTHO05D001894 8.0e-09 63.5 68 48.5
MD10G1239800 Malus domestica HOM05D001332 ORTHO05D001894 8.0e-09 63.5 50 58.0
SEGI_37226 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 8.0e-09 63.5 72 48.6
Ah.02g118260 Amaranthus hybridus HOM05D001332 ORTHO05D001894 1.0e-08 63.2 68 50.0
Lsat_1_v5_gn_2_39360 Lactuca sativa HOM05D001332 ORTHO05D001894 1.0e-08 63.2 56 60.7
Lj1g0011871 Lotus japonicus HOM05D001332 ORTHO05D001894 1.0e-08 63.2 58 58.6
MSTRG.23237 Avicennia marina HOM05D001332 ORTHO05D001894 1.4e-08 62.8 49 65.3
SalBow8G0886 Salvia bowleyana HOM05D021639 ORTHO05D001894 1.4e-08 62.8 49 61.2
SalBow8G0934 Salvia bowleyana HOM05D021639 ORTHO05D001894 1.4e-08 62.8 49 61.2
Hund21760 Selenicereus undatus HOM05D001332 ORTHO05D001894 1.4e-08 62.8 66 50.0
Dinv20721 Davidia involucrata HOM05D001332 ORTHO05D001894 1.8e-08 62.4 54 59.3
SGA_v2.0_scaffold51G18838 Striga asiatica HOM05D001332 ORTHO05D001894 1.8e-08 62.4 71 47.9
Hma1.2p1_0296F.1_g116940 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 2.3e-08 62.0 55 58.2
Cc00_g04340 Coffea canephora HOM05D001332 ORTHO05D001894 3.1e-08 61.6 49 61.2
MELO3C023210.2 Cucumis melo HOM05D001332 ORTHO05D001894 3.1e-08 61.6 56 57.1
Nitab4.5_0000905g0100 Nicotiana tabacum HOM05D001332 ORTHO05D001894 3.1e-08 61.6 49 63.3
Phvul.009G160000 Phaseolus vulgaris HOM05D001332 ORTHO05D001894 3.1e-08 61.6 58 60.3
VMungo1309G1682 Vigna mungo HOM05D001332 ORTHO05D001894 4.0e-08 61.2 59 57.6
GSVIVG01000240001 Vitis vinifera HOM05D001332 ORTHO05D001894 4.0e-08 61.2 56 55.4
Gohir.D10G110250 Gossypium hirsutum HOM05D001332 ORTHO05D001894 5.2e-08 60.8 54 63.0
Psat5g056320 Pisum sativum HOM05D001332 ORTHO05D001894 5.2e-08 60.8 69 49.3
Sed0019998 Sechium edule HOM05D001332 ORTHO05D001894 5.2e-08 60.8 51 62.7
AUR62000623 Chenopodium quinoa HOM05D001332 ORTHO05D001894 6.8e-08 60.5 50 60.0
AUR62006976 Chenopodium quinoa HOM05D001332 ORTHO05D001894 6.8e-08 60.5 50 60.0
Nitab4.5_0000835g0020 Nicotiana tabacum HOM05D001332 ORTHO05D001894 8.9e-08 60.1 54 55.6
Haze_07710 Corylus avellana HOM05D000001 ORTHO05D000003 1.2e-07 59.7 46 63.0
Glyma.04G204300 Glycine max HOM05D001332 ORTHO05D001894 1.2e-07 59.7 58 56.9
HPP92_003122 Vanilla planifolia HOM05D001332 ORTHO05D001894 1.5e-07 59.3 73 39.7
ClCG02G000220 Citrullus lanatus HOM05D001332 ORTHO05D001894 2.0e-07 58.9 56 53.6
Gohir.D12G002100 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.0e-07 58.9 55 49.1
Gorai.008G001500 Gossypium raimondii HOM05D001332 ORTHO05D001894 2.0e-07 58.9 55 49.1
HanXRQChr14g0434451 Helianthus annuus HOM05D001332 ORTHO05D001894 2.0e-07 58.9 76 46.1
PSO135G0028 Papaver somniferum HOM05D001332 ORTHO05D001894 2.6e-07 58.5 56 55.4
Sabra04G0084000 Salix brachista HOM05D001332 ORTHO05D001894 2.6e-07 58.5 59 49.2
AUR62025573 Chenopodium quinoa HOM05D001332 ORTHO05D001894 3.4e-07 58.2 49 55.1
Lalb_Chr11g0068901 Lupinus albus HOM05D001332 ORTHO05D001894 3.4e-07 58.2 58 53.4
Potri.004G134132 Populus trichocarpa HOM05D001332 ORTHO05D001894 3.4e-07 58.2 56 51.8
arahy.Tifrunner.gnm1.ann1.1BHT4U Arachis hypogaea HOM05D001332 ORTHO05D001894 5.8e-07 57.4 56 55.4
arahy.Tifrunner.gnm1.ann1.CWP525 Arachis hypogaea HOM05D001332 ORTHO05D001894 5.8e-07 57.4 56 55.4
Ca_17039_v3 Cicer arietinum L. HOM05D001332 ORTHO05D001894 5.8e-07 57.4 74 44.6
Duzib187G1216 Durio zibethinus HOM05D001332 ORTHO05D001894 9.8e-07 56.6 55 52.7
Lalb_Chr23g0272781 Lupinus albus HOM05D001332 ORTHO05D001894 9.8e-07 56.6 58 51.7
HanXRQChr13g0394841 Helianthus annuus HOM05D001332 ORTHO05D001894 1.3e-06 56.2 55 56.4
Medtr3g098130 Medicago truncatula HOM05D001332 ORTHO05D001894 1.7e-06 55.8 57 52.6
Gohir.A12G002400 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.2e-06 55.5 55 50.9
AUR62025524 Chenopodium quinoa HOM05D001332 ORTHO05D001894 3.7e-06 54.7 49 53.1
Medtr3g098100 Medicago truncatula HOM05D001332 ORTHO05D001894 3.7e-06 54.7 52 55.8
TPR.G7793 Trifolium pratense HOM05D001332 ORTHO05D001894 4.9e-06 54.3 51 60.8
HPP92_005666 Vanilla planifolia HOM05D001332 ORTHO05D001894 4.9e-06 54.3 62 45.2
Zm00001eb434530 Zea mays HOM05D001332 ORTHO05D001894 8.3e-06 53.5 59 44.1


User provided reference genes

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