Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 2.1e-169 599.0 308 100.0
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 1.2e-127 460.3 240 99.2
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.7e-115 419.9 370 66.8
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 4.9e-110 401.7 244 88.9
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 2.5e-90 336.3 173 99.4
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 7.9e-84 314.7 173 93.6
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.8e-83 313.5 233 73.4
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.8e-70 269.2 171 79.5
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.1e-69 267.7 173 78.6
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 1.4e-69 267.3 170 81.2
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 1.4e-69 267.3 170 81.2
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 3.2e-69 266.2 174 80.5
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 3.2e-69 266.2 174 80.5
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 7.2e-69 265.0 171 77.8
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 1.6e-68 263.8 168 81.0
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 2.1e-68 263.5 171 76.6
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 7.4e-66 255.0 171 76.0
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 3.1e-64 249.6 174 72.4
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 5.3e-64 248.8 172 74.4
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 4.5e-47 192.6 172 58.1
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 5.0e-46 189.1 175 57.1
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 6.5e-46 188.7 119 78.2
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.3e-38 164.5 179 50.3
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 5.0e-38 162.5 180 48.9
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 2.5e-37 160.2 179 49.2
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 3.3e-37 159.8 179 46.9
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.2e-36 157.9 192 44.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 1.2e-36 157.9 178 48.3
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.6e-36 157.5 176 50.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.0e-35 154.8 180 48.3
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.0e-35 154.8 176 48.9
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.4e-35 154.5 194 45.4
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.8e-35 154.1 179 47.5
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.3e-35 153.7 180 47.8
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 3.0e-35 153.3 180 47.8
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 4.0e-35 152.9 181 47.5
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.8e-35 152.1 177 48.6
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.0e-34 150.6 176 46.6
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 7.5e-34 148.7 184 47.8
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 7.5e-34 148.7 178 47.2
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 7.5e-34 148.7 176 46.0
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 9.8e-34 148.3 172 48.3
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 2.8e-33 146.7 179 44.7
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 3.7e-33 146.4 175 45.7
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 4.9e-33 146.0 180 45.6
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 6.3e-33 145.6 179 43.6
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 8.3e-33 145.2 178 45.5
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.1e-32 144.8 182 44.5
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.1e-32 144.8 178 44.9
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 3.1e-32 143.3 180 45.0
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 4.1e-32 142.9 180 43.9
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 4.1e-32 142.9 176 44.9
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 4.1e-32 142.9 179 44.7
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 5.4e-32 142.5 197 42.6
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.4e-32 142.5 175 45.1
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.4e-32 142.5 174 45.4
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 5.4e-32 142.5 174 45.4
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 5.4e-32 142.5 178 44.9
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 5.4e-32 142.5 166 45.2
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.2e-31 141.4 177 46.3
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 2.0e-31 140.6 173 43.4
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.0e-31 140.6 169 46.2
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.0e-31 140.6 177 46.9
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.0e-31 140.6 171 46.2
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.7e-31 140.2 179 41.9
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 3.5e-31 139.8 172 43.6
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 3.5e-31 139.8 173 43.9
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 7.8e-31 138.7 181 43.1
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 7.8e-31 138.7 175 45.7
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 7.8e-31 138.7 169 45.0
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 7.8e-31 138.7 175 45.1
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 7.8e-31 138.7 179 41.9
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 7.8e-31 138.7 177 45.2
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.0e-30 138.3 171 43.9
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.3e-30 137.9 179 44.1
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.3e-30 137.9 173 44.5
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.3e-30 137.1 177 46.3
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 2.3e-30 137.1 187 44.9
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.9e-30 136.7 172 45.3
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 3.9e-30 136.3 183 43.7
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 5.0e-30 136.0 173 44.5
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 5.0e-30 136.0 171 41.5
BcaC03g16288 Brassica carinata HOM05D011913 ORTHO05D014322 6.6e-30 135.6 67 98.5
A05p32430 Brassica napus HOM05D001482 ORTHO05D001499 6.6e-30 135.6 67 98.5
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 6.6e-30 135.6 174 44.8
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 6.6e-30 135.6 193 40.4
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 6.6e-30 135.6 193 40.4
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 6.6e-30 135.6 173 42.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 6.6e-30 135.6 173 42.8
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 8.6e-30 135.2 177 44.1
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 8.6e-30 135.2 170 45.3
BraA05t22070Z Brassica rapa HOM05D001482 ORTHO05D001499 1.9e-29 134.0 67 97.0
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.9e-29 134.0 173 43.4
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 1.9e-29 134.0 165 45.5
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 2.5e-29 133.7 178 44.4
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.5e-29 133.7 175 44.0
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 5.6e-29 132.5 179 44.1
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.3e-29 132.1 177 44.6
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 7.3e-29 132.1 172 42.4
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 9.5e-29 131.7 165 44.8
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 9.5e-29 131.7 182 42.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.5e-29 131.7 178 42.1
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 9.5e-29 131.7 164 44.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.8e-28 130.2 178 41.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 6.1e-28 129.0 193 39.9
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 6.1e-28 129.0 114 57.0
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 1.4e-27 127.9 169 43.2
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.4e-27 127.9 172 43.0
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 3.1e-27 126.7 175 41.1
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 5.2e-27 125.9 169 43.8
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 8.9e-27 125.2 178 41.0
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.2e-26 124.8 173 41.6
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 1.2e-26 124.8 163 42.3
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.2e-26 124.8 180 39.4
BolC2t10101H Brassica oleracea HOM05D011913 ORTHO05D014322 1.5e-26 124.4 67 94.0
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.5e-26 124.4 165 44.2
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 2.0e-26 124.0 177 39.5
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.0e-26 124.0 169 43.8
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 7.5e-26 122.1 169 42.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.3e-25 121.3 172 41.9
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.7e-25 120.9 175 39.4
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.2e-25 120.6 168 42.3
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 2.9e-25 120.2 183 41.5
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.9e-24 117.5 171 42.1
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 4.1e-24 116.3 163 39.3
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 5.4e-24 115.9 184 39.7
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.2e-23 114.8 164 40.9
Thhalv10029377m.g Eutrema salsugineum HOM05D011913 ORTHO05D014322 1.7e-22 110.9 66 84.8
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.5e-21 107.8 173 40.5
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.9e-21 107.5 154 39.6
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 6.2e-20 102.4 164 37.2
Aa31LG9G10230 Aethionema arabicum HOM05D011913 ORTHO05D014322 1.2e-18 98.2 67 73.1
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.2e-18 98.2 186 36.6
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 6.6e-14 82.4 180 34.4
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 5.2e-11 72.8 181 27.6
Aa31LG9G10250 Aethionema arabicum HOM05D011913 ORTHO05D014322 6.8e-11 72.4 53 67.9
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 2.0e-10 70.9 114 39.5
Aa31sc2410G10 Aethionema arabicum HOM05D011913 ORTHO05D014322 5.8e-10 69.3 53 62.3
AL6G47220 Arabidopsis lyrata HOM05D011913 ORTHO05D014322 9.9e-10 68.6 69 52.2
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.7e-09 67.8 176 27.8
Carub.0006s3150 Capsella rubella HOM05D011913 ORTHO05D014322 6.4e-09 65.9 75 46.7
Aa31LG4G3760 Aethionema arabicum HOM05D001858 ORTHO05D001838 3.2e-08 63.5 69 43.5
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 7.1e-08 62.4 179 25.1
BcaB05g23750 Brassica carinata HOM05D011913 ORTHO05D014322 1.6e-07 61.2 71 45.1
C02p40840 Brassica napus HOM05D011913 ORTHO05D014322 4.6e-07 59.7 75 46.7
Thecc.03G059100 Theobroma cacao HOM05D001858 ORTHO05D001838 4.6e-07 59.7 67 40.3
AL2G33310 Arabidopsis lyrata HOM05D001858 ORTHO05D001838 6.0e-07 59.3 64 40.6
SalBow1G4970 Salvia bowleyana HOM05D001858 ORTHO05D001838 6.0e-07 59.3 65 44.6
AT1G73560 Arabidopsis thaliana HOM05D001858 ORTHO05D001838 1.7e-06 57.8 64 42.2
BcaB03g15718 Brassica carinata HOM05D001858 ORTHO05D001838 2.3e-06 57.4 69 40.6
Carub.0002s0219 Capsella rubella HOM05D001858 ORTHO05D001838 2.3e-06 57.4 74 37.8
HanXRQChr02g0049661 Helianthus annuus HOM05D001858 ORTHO05D001838 2.3e-06 57.4 73 35.6
PSO478G1109 Papaver somniferum HOM05D001858 ORTHO05D001838 2.3e-06 57.4 60 41.7
PSO782G3337 Papaver somniferum HOM05D001858 ORTHO05D001838 2.3e-06 57.4 60 41.7
AT1G62790 Arabidopsis thaliana HOM05D001858 ORTHO05D001838 3.0e-06 57.0 68 42.6
Lj4g0000999 Lotus japonicus HOM05D001858 ORTHO05D001838 3.9e-06 56.6 82 34.1
AL2G13000 Arabidopsis lyrata HOM05D001858 ORTHO05D001838 5.1e-06 56.2 68 41.2
A07p29770 Brassica napus HOM05D001858 ORTHO05D001838 5.1e-06 56.2 91 39.6
BraA07t30615Z Brassica rapa HOM05D001858 ORTHO05D000124 5.1e-06 56.2 91 39.6
Dinv09298 Davidia involucrata HOM05D001858 ORTHO05D001838 5.1e-06 56.2 69 37.7
Haze_08594 Corylus avellana HOM05D001858 ORTHO05D001838 6.6e-06 55.8 58 43.1
Duzib084G1282 Durio zibethinus HOM05D001858 ORTHO05D001838 6.6e-06 55.8 77 37.7


User provided reference genes

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