Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p40810 Brassica napus HOM05D001286 ORTHO05D000440 3.9e-53 211.1 97 100.0
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 1.5e-52 209.1 97 99.0
BcaC03g16285 Brassica carinata HOM05D001286 ORTHO05D000440 1.2e-51 206.1 97 96.9
BolC2t10098H Brassica oleracea HOM05D001286 ORTHO05D000440 1.2e-51 206.1 97 96.9
BraA02t07559Z Brassica rapa HOM05D001286 ORTHO05D000440 6.2e-51 203.8 97 96.9
BcaB05g23747 Brassica carinata HOM05D001286 ORTHO05D000440 5.8e-49 197.2 97 91.8
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 1.8e-42 175.6 96 82.3
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 1.8e-42 175.6 96 82.3
Sp6g05220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.5e-41 172.6 97 82.5
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.4e-39 166.0 97 79.4
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.4e-39 165.2 97 78.4
AT4G12370 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 7.1e-39 163.7 97 75.3
Thhalv10029362m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 2.1e-30 135.6 80 81.2
Carub.0006s3151 Capsella rubella HOM05D001286 ORTHO05D000440 4.8e-27 124.4 79 74.7
AT4G10700 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.2e-25 119.8 99 61.6
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 7.6e-25 117.1 90 58.9
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.4e-24 114.0 97 50.5
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.1e-23 113.2 97 52.6
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.2e-23 111.7 98 53.1
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 4.2e-23 111.3 95 51.6
AT4G10660 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 4.2e-23 111.3 90 63.3
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.6e-22 109.4 99 57.6
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 1.6e-22 109.4 97 48.5
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 1.6e-22 109.4 97 48.5
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 1.6e-22 109.4 97 48.5
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.6e-22 109.4 93 54.8
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.5e-22 108.2 87 51.7
BcaC04g23040 Brassica carinata HOM05D001286 ORTHO05D000440 5.6e-20 100.9 95 45.3
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 6.2e-19 97.4 92 51.1
Sp6g05180 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.4e-18 96.3 89 52.8
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 2.4e-18 95.5 95 47.4
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 3.1e-18 95.1 92 48.9
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 4.0e-18 94.7 97 45.4
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 4.0e-18 94.7 97 45.4
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 4.0e-18 94.7 92 47.8
Thhalv10029151m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 9.0e-18 93.6 52 78.8
C03p35920 Brassica napus HOM05D001286 ORTHO05D000440 1.2e-17 93.2 90 55.6
BolC3t15900H Brassica oleracea HOM05D001286 ORTHO05D000440 1.2e-17 93.2 90 55.6
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 1.2e-17 93.2 102 50.0
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.5e-17 92.8 92 47.8
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 2.0e-17 92.4 92 50.0
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 2.0e-17 92.4 92 50.0
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 2.6e-17 92.0 92 53.3
BcaC01g04596 Brassica carinata HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 54.4
BcaC01g04597 Brassica carinata HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 54.4
A03p29650 Brassica napus HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 55.6
A03p29660 Brassica napus HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 55.6
BraA03t12159Z Brassica rapa HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 55.6
BraA03t12160Z Brassica rapa HOM05D001286 ORTHO05D000440 4.5e-17 91.3 90 55.6
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 4.5e-17 91.3 95 51.6
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 4.5e-17 91.3 92 47.8
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 5.8e-17 90.9 99 46.5
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 7.6e-17 90.5 92 52.2
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 7.6e-17 90.5 92 47.8
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 1.0e-16 90.1 102 50.0
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 1.3e-16 89.7 102 48.0
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 2.2e-16 89.0 99 45.5
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 2.2e-16 89.0 92 48.9
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 2.2e-16 89.0 99 46.5
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 2.2e-16 89.0 99 46.5
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 2.2e-16 89.0 99 46.5
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 2.9e-16 88.6 92 50.0
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 3.8e-16 88.2 102 48.0
CARHR253830 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.8e-16 88.2 98 45.9
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 4.9e-16 87.8 92 48.9
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 6.5e-16 87.4 99 45.5
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 6.5e-16 87.4 99 45.5
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 6.5e-16 87.4 95 49.5
BcaB01g02678 Brassica carinata HOM05D001286 ORTHO05D000440 8.4e-16 87.0 92 42.4
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 8.4e-16 87.0 97 50.5
Lj3P997T36 Lonicera japonica HOM05D001286 ORTHO05D000440 8.4e-16 87.0 92 46.7
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 8.4e-16 87.0 92 47.8
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 1.1e-15 86.7 92 46.7
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 1.1e-15 86.7 97 45.4
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.1e-15 86.7 89 49.4
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.4e-15 86.3 94 46.8
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.4e-15 86.3 94 46.8
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 1.4e-15 86.3 94 46.8
TWI77G1030 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.4e-15 86.3 92 47.8
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 1.9e-15 85.9 92 47.8
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.9e-15 85.9 95 49.5
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 1.9e-15 85.9 95 49.5
BcaB01g02647 Brassica carinata HOM05D001286 ORTHO05D000440 2.5e-15 85.5 90 52.2
CARHR216300 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.5e-15 85.5 94 47.9
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 2.5e-15 85.5 92 46.7
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 4.2e-15 84.7 92 46.7
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 4.2e-15 84.7 92 47.8
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 4.2e-15 84.7 92 46.7
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 4.2e-15 84.7 92 46.7
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 5.5e-15 84.3 92 45.7
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 9.3e-15 83.6 97 45.4
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 9.3e-15 83.6 92 46.7
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 9.3e-15 83.6 92 44.6
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 1.2e-14 83.2 97 44.3
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 1.2e-14 83.2 92 44.6
MD12G1025100 Malus domestica HOM05D001286 ORTHO05D000440 1.2e-14 83.2 92 45.7
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 1.2e-14 83.2 92 45.7
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.2e-14 83.2 95 48.4
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.6e-14 82.8 92 45.7
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 2.7e-14 82.0 97 42.3
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 2.7e-14 82.0 99 44.4
BcaB01g02651 Brassica carinata HOM05D001286 ORTHO05D000440 4.6e-14 81.3 90 53.3
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 4.6e-14 81.3 92 45.7
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 4.6e-14 81.3 95 47.4
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 6.0e-14 80.9 95 46.3
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 7.9e-14 80.5 92 42.4
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 1.0e-13 80.1 92 46.7
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 1.3e-13 79.7 95 46.3
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.3e-13 79.7 92 42.4
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 1.8e-13 79.3 99 42.4
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 3.0e-13 78.6 91 47.3
Medtr7g104785 Medicago truncatula HOM05D001286 ORTHO05D000440 3.0e-13 78.6 92 43.5
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 3.0e-13 78.6 99 41.4
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 5.1e-13 77.8 95 46.3
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 6.7e-13 77.4 102 43.1
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 6.7e-13 77.4 94 46.8
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 8.7e-13 77.0 97 42.3
CARHR253820 Cardamine hirsuta HOM05D001286 ORTHO05D000440 8.7e-13 77.0 71 49.3
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 8.7e-13 77.0 99 39.4
BraA02t07603Z Brassica rapa HOM05D001286 ORTHO05D027858 1.5e-12 76.3 98 41.8
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 1.5e-12 76.3 94 46.8
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 1.5e-12 76.3 94 46.8
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 1.9e-12 75.9 94 45.7
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 1.9e-12 75.9 102 44.1
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 2.5e-12 75.5 102 42.2
unitig_744.g24700 Utricularia gibba HOM05D001286 ORTHO05D000440 2.5e-12 75.5 91 42.9
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 3.3e-12 75.1 89 44.9
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 3.3e-12 75.1 89 44.9
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 5.7e-12 74.3 92 43.5
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.6e-11 72.8 100 44.0
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 1.6e-11 72.8 91 42.9
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 2.2e-11 72.4 92 40.2
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 2.2e-11 72.4 92 40.2
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 2.2e-11 72.4 92 40.2
FvH4_6g18890 Fragaria vesca HOM05D001286 ORTHO05D000440 2.8e-11 72.0 92 39.1
FAN14G2386 Fragaria x ananassa HOM05D001286 ORTHO05D000440 3.7e-11 71.6 92 38.0
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 4.8e-11 71.2 95 44.2
FAN05G3626 Fragaria x ananassa HOM05D001286 ORTHO05D000440 6.3e-11 70.9 92 38.0
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 6.3e-11 70.9 92 40.2
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 1.8e-10 69.3 95 43.2
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 2.4e-10 68.9 95 43.2
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 3.1e-10 68.6 104 40.4
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 3.1e-10 68.6 104 40.4
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 3.1e-10 68.6 92 37.0
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 4.1e-10 68.2 103 40.8
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 4.1e-10 68.2 92 37.0
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 9.0e-10 67.0 104 40.4
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 9.0e-10 67.0 104 40.4
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 9.0e-10 67.0 104 40.4
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 2.6e-09 65.5 100 43.0
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.6e-09 65.5 100 42.0
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 3.4e-09 65.1 94 36.2
Carub.0002s0673 Capsella rubella HOM05D001286 ORTHO05D000440 1.7e-08 62.8 96 39.6
Aa31csc81G80 Aethionema arabicum HOM05D001286 ORTHO05D000440 1.9e-07 59.3 97 37.1
A02p26090 Brassica napus HOM05D001286 ORTHO05D027858 4.2e-07 58.2 61 49.2
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 7.2e-07 57.4 103 36.9
Medtr7g104760 Medicago truncatula HOM05D001286 ORTHO05D000440 1.2e-06 56.6 55 49.1
Aa31LG2G11100 Aethionema arabicum HOM05D001286 ORTHO05D000440 6.1e-06 54.3 98 37.8


User provided reference genes

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