Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.5e-64 247.3 130 100.0
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 8.9e-53 210.3 130 90.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.5e-52 209.5 136 83.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 4.4e-52 208.0 137 81.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.2e-51 205.7 136 81.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 8.3e-51 203.8 145 79.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.4e-50 203.0 136 80.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.8e-50 202.6 136 80.1
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-50 202.2 147 76.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-50 202.2 147 76.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.4e-50 201.1 135 79.3
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.4e-50 201.1 135 79.3
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 5.4e-50 201.1 135 79.3
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-49 199.9 130 86.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.2e-49 199.9 136 80.1
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.6e-49 199.5 135 79.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.6e-49 199.5 135 78.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.0e-49 199.1 137 78.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 7.8e-49 197.2 135 77.8
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.3e-48 196.4 136 79.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.3e-48 196.4 148 74.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.7e-48 196.1 134 79.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.7e-48 196.1 134 79.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-48 195.7 103 99.0
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.3e-48 195.7 136 77.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-48 195.3 151 72.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-48 195.3 130 83.8
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-48 195.3 151 72.8
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.9e-48 195.3 135 76.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.9e-48 194.9 136 76.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.9e-48 194.9 135 77.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.6e-48 194.1 134 79.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.6e-48 193.7 135 77.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.5e-47 193.0 136 77.2
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.9e-47 192.6 136 77.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.9e-47 192.6 135 75.6
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.9e-47 192.6 135 75.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.9e-47 192.6 135 77.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.3e-47 191.8 135 77.0
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 4.3e-47 191.4 134 77.6
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 4.3e-47 191.4 136 76.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 5.6e-47 191.0 135 76.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 5.6e-47 191.0 143 72.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.3e-47 190.7 134 75.4
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.3e-47 190.7 134 75.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 7.3e-47 190.7 134 76.1
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.2e-46 189.9 134 75.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.2e-46 189.9 137 75.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.2e-46 189.9 139 73.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.1e-46 189.1 134 75.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.8e-46 188.7 135 75.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.8e-46 188.7 134 76.1
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.8e-46 188.7 134 75.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.6e-46 188.3 135 75.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.6e-46 188.3 135 74.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 3.6e-46 188.3 136 75.7
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.6e-46 188.3 135 75.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.7e-46 188.0 135 75.6
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.0e-46 187.2 135 74.8
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-45 185.7 136 72.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.1e-45 185.3 160 68.1
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 4.0e-45 184.9 131 75.6
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 4.0e-45 184.9 135 74.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.0e-45 184.9 140 72.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.2e-45 184.5 135 74.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 8.9e-45 183.7 140 72.1
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-44 183.3 135 74.1
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.5e-44 183.0 156 66.0
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.6e-44 182.2 137 72.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.6e-44 182.2 138 71.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.4e-44 181.8 134 72.4
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.4e-44 181.4 135 73.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 9.8e-44 180.3 137 73.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.3e-43 179.9 134 73.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.2e-43 179.1 134 71.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.7e-43 178.3 135 73.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.9e-43 177.9 135 73.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 4.9e-43 177.9 135 72.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.9e-43 177.9 135 72.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.4e-43 177.6 135 72.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 6.4e-43 177.6 137 71.5
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.4e-43 177.6 140 70.0
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 6.4e-43 177.6 134 71.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.3e-43 177.2 131 71.8
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.1e-42 176.8 135 72.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.9e-42 176.0 134 71.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-42 175.6 140 69.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.2e-42 175.3 135 71.9
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.1e-42 174.9 144 66.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 5.4e-42 174.5 135 68.9
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 5.4e-42 174.5 135 68.9
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 5.4e-42 174.5 136 69.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-41 172.9 135 70.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.6e-41 172.9 134 71.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 2.0e-41 172.6 138 68.8
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.7e-41 172.2 134 70.9
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.7e-41 172.2 134 69.4
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.7e-41 172.2 134 70.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.7e-41 172.2 135 71.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.6e-41 171.4 142 66.2
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 6.0e-41 171.0 144 66.7
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.7e-40 169.5 134 70.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.9e-40 168.3 98 89.8
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.6e-40 167.5 148 62.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 8.6e-40 167.2 129 72.1
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.3e-39 164.9 134 67.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 7.3e-39 164.1 174 56.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.7e-38 161.4 166 57.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.8e-37 159.5 134 64.9
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.3e-37 159.1 137 67.2
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.1e-37 158.7 135 63.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.5e-36 156.4 170 56.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 3.4e-36 155.2 136 61.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.4e-36 154.8 113 74.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.3e-35 153.3 135 63.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.1e-34 150.2 112 74.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.9e-34 149.4 164 53.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 7.8e-33 144.1 119 66.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-32 143.7 115 70.4
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-31 140.2 116 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.3e-31 138.7 135 54.8
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 7.3e-31 137.5 163 49.7
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 9.5e-31 137.1 113 65.5
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.1e-30 136.0 130 55.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.8e-29 132.9 154 51.9
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.1e-29 132.1 126 61.9
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-28 130.2 134 58.2
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.9e-28 127.1 131 57.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.9e-27 125.6 98 67.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.7e-27 125.2 112 64.3
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-25 119.8 76 84.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.5e-25 118.6 76 84.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.0e-25 117.9 76 81.6
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.0e-24 117.1 76 81.6
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 5.1e-24 114.8 132 49.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.3e-23 111.7 76 77.6
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.3e-23 110.9 76 76.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.8e-22 109.0 118 53.4
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-21 106.7 85 68.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.5e-20 103.2 67 77.6
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.5e-20 103.2 85 67.1
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 9.9e-20 100.5 65 80.0
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.7e-19 99.8 133 49.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.7e-19 99.8 128 49.2
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-16 88.2 73 65.8
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.1e-16 88.2 73 65.8
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.1e-14 82.8 65 69.2
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-13 80.5 49 77.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.9e-13 77.8 70 64.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.5e-12 76.6 131 38.9
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.0e-12 76.3 53 73.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-11 73.2 77 58.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 3.8e-11 72.0 101 49.5
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 8.4e-11 70.9 82 52.4
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-10 68.6 58 62.1
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-10 68.2 98 46.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-10 68.2 55 65.5
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 5.4e-10 68.2 98 46.9
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.1e-10 67.8 58 62.1
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-08 63.2 44 68.2
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 7.3e-07 57.8 44 70.5
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-06 57.0 37 78.4
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-06 57.0 37 78.4
BcaC02g10822 Brassica carinata HOM05D016370 ORTHO05D018632 8.1e-06 54.3 35 74.3


User provided reference genes

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