Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 2.9e-79 298.9 196 100.0
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 4.1e-78 295.0 196 92.9
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 4.1e-78 295.0 196 92.9
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 2.0e-77 292.7 196 98.5
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 6.0e-77 291.2 196 96.4
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 1.8e-65 253.1 205 73.7
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 3.5e-53 212.2 194 64.9
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 6.6e-52 208.0 189 65.1
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 2.5e-51 206.1 195 63.6
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 3.3e-51 205.7 189 64.6
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 9.6e-51 204.1 194 62.4
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 1.6e-50 203.4 188 63.3
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 2.8e-50 202.6 192 70.3
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 1.5e-48 196.8 194 60.8
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 7.6e-48 194.5 192 59.9
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 3.8e-47 192.2 184 59.8
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 1.2e-45 187.2 186 57.0
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 1.5e-40 170.2 167 72.5
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 8.4e-39 164.5 190 55.3
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 2.2e-31 139.8 180 43.9
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 5.5e-30 135.2 183 49.7
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 1.1e-27 127.5 179 41.3
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 1.9e-27 126.7 183 48.6
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 2.5e-27 126.3 171 56.7
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 1.6e-26 123.6 185 40.0
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 3.7e-26 122.5 167 57.5
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 3.7e-26 122.5 167 44.9
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 6.2e-26 121.7 173 54.9
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 1.4e-25 120.6 179 48.6
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 2.4e-25 119.8 164 53.7
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 3.1e-25 119.4 188 40.4
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 4.0e-25 119.0 173 46.2
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 4.0e-25 119.0 168 50.0
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 6.9e-25 118.2 183 45.9
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 9.0e-25 117.9 176 40.9
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 1.2e-24 117.5 177 40.1
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 1.5e-24 117.1 170 44.7
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 2.0e-24 116.7 193 49.7
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 2.6e-24 116.3 169 43.8
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 2.6e-24 116.3 186 46.8
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 2.6e-24 116.3 184 47.3
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 4.5e-24 115.5 180 40.0
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 1.0e-23 114.4 162 42.0
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 1.0e-23 114.4 161 44.1
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 1.3e-23 114.0 170 51.8
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 2.2e-23 113.2 166 45.2
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 2.2e-23 113.2 192 39.1
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 2.9e-23 112.8 165 39.4
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 4.9e-23 112.1 166 49.4
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 6.5e-23 111.7 183 42.6
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 6.5e-23 111.7 224 39.7
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 8.4e-23 111.3 169 43.2
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 1.1e-22 110.9 204 48.5
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 1.4e-22 110.5 188 46.3
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 2.5e-22 109.8 177 42.9
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 4.2e-22 109.0 174 43.1
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 7.1e-22 108.2 194 45.4
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 7.1e-22 108.2 174 39.7
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 7.1e-22 108.2 174 39.7
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 1.2e-21 107.5 186 38.7
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 2.1e-21 106.7 167 38.3
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 2.7e-21 106.3 179 43.0
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 2.7e-21 106.3 174 40.2
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 2.7e-21 106.3 192 39.6
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 2.7e-21 106.3 182 37.9
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 3.5e-21 105.9 176 39.2
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 3.5e-21 105.9 194 44.8
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 4.6e-21 105.5 166 48.2
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 4.6e-21 105.5 151 41.7
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 6.0e-21 105.1 179 40.8
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 1.3e-20 104.0 150 43.3
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.1e-19 100.9 183 41.0
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 1.9e-19 100.1 194 37.6
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 2.5e-19 99.8 160 41.9
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 2.5e-19 99.8 206 40.8
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 3.3e-19 99.4 228 33.3
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 3.3e-19 99.4 165 43.6
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 7.4e-19 98.2 162 46.3
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 2.8e-18 96.3 186 37.6
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 2.8e-18 96.3 186 37.6
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 3.7e-18 95.9 186 37.6
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 3.7e-18 95.9 146 42.5
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 4.8e-18 95.5 216 33.3
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 4.8e-18 95.5 152 42.1
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 8.2e-18 94.7 213 33.8
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 1.1e-17 94.4 156 39.1
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.4e-17 94.0 186 38.2
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 1.8e-17 93.6 181 35.9
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 1.8e-17 93.6 186 36.6
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 1.5e-16 90.5 224 31.7
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 2.0e-16 90.1 169 49.7
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 4.5e-16 89.0 201 39.8
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 2.9e-15 86.3 178 37.6
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 6.5e-15 85.1 180 47.2
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 8.5e-15 84.7 141 39.0
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.1e-14 84.3 186 34.9
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 2.5e-14 83.2 108 49.1
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 3.2e-14 82.8 206 32.5
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 5.5e-14 82.0 151 39.7
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 5.5e-14 82.0 185 39.5
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 3.6e-13 79.3 192 33.9
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 1.8e-12 77.0 119 45.4
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 2.3e-12 76.6 159 46.5
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 4.3e-11 72.4 45 75.6
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 4.3e-11 72.4 150 39.3
SHI15557 Sapria himalayana HOM05D006618 ORTHO05D008291 9.7e-11 71.2 57 70.2
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 1.7e-10 70.5 146 46.6
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 2.2e-10 70.1 125 40.8
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 6.3e-10 68.6 146 39.0
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 6.3e-10 68.6 159 37.7
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 1.1e-09 67.8 174 42.5
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.4e-09 67.4 132 37.9
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 1.8e-09 67.0 146 33.6
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 3.1e-09 66.2 96 46.9
SEGI_31360 Sequoiadendron giganteum HOM05D006618 ORTHO05D008291 3.8e-07 59.3 60 56.7
AagrBONN_evm.TU.Sc2ySwM_117.1999 Anthoceros agrestis HOM05D006618 ORTHO05D008291 8.5e-07 58.2 60 55.0


User provided reference genes

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