Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 6.1e-245 850.5 471 100.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.4e-235 818.1 472 97.5
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.4e-228 796.2 471 93.0
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 4.0e-228 794.7 471 92.8
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.2e-219 766.5 489 89.8
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.5e-162 574.3 567 65.1
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.0e-155 553.1 547 64.0
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 5.9e-155 551.6 561 65.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.7e-154 550.1 534 65.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.1e-152 543.1 555 63.4
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.7e-144 515.4 561 59.4
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-142 509.6 505 65.1
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 7.0e-140 501.5 536 61.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.0e-139 500.0 540 60.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-134 483.0 534 60.3
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 8.9e-119 431.4 541 51.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.4e-118 429.5 541 52.9
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.2e-112 411.0 571 49.4
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.1e-112 410.2 574 48.8
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.8e-111 407.1 579 46.8
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.4e-108 397.5 564 48.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.0e-107 392.1 583 46.8
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 4.3e-105 386.0 551 47.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 8.9e-103 378.3 536 48.1
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.9e-100 370.5 566 45.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.3e-97 359.8 565 45.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.6e-96 357.5 556 45.1
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.4e-92 343.6 295 67.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 5.4e-92 342.4 561 44.7
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.6e-91 339.3 608 40.8
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 4.6e-91 339.3 296 64.5
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.7e-90 337.4 627 39.2
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-90 337.4 564 42.2
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.5e-89 334.3 561 43.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.9e-89 334.0 608 40.3
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.3e-89 332.8 619 40.1
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.2e-88 331.3 311 62.4
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.6e-88 330.9 298 63.1
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.1e-88 330.5 344 57.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.8e-88 330.1 610 40.3
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-87 327.4 608 40.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.4e-87 327.0 540 43.0
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.1e-87 326.6 586 40.1
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.2e-87 325.9 513 44.6
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.0e-86 323.9 586 41.0
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-86 323.6 600 39.8
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 4.4e-86 322.8 612 39.9
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.6e-86 322.0 597 41.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 7.6e-86 322.0 328 57.6
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 9.9e-86 321.6 576 41.7
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 9.9e-86 321.6 640 37.5
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.9e-84 317.4 600 39.0
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 4.2e-84 316.2 366 54.1
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 5.4e-84 315.8 360 51.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 7.1e-84 315.5 561 40.6
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.2e-83 314.7 378 50.8
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-83 314.3 601 38.6
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.6e-83 314.3 607 38.4
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.1e-83 313.9 318 57.5
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 4.6e-83 312.8 326 57.4
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.0e-83 312.4 601 39.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 7.8e-83 312.0 657 37.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 7.8e-83 312.0 561 39.4
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.0e-82 311.6 572 41.4
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.0e-82 311.6 373 50.9
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.3e-82 310.5 616 40.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.9e-82 309.7 266 66.9
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.9e-82 309.7 599 39.9
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.1e-82 309.3 621 38.8
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 6.6e-82 308.9 606 38.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 8.7e-82 308.5 273 64.8
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.1e-81 308.1 597 39.5
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.3e-81 306.6 604 39.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.1e-80 303.9 335 55.2
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.6e-80 303.1 329 55.3
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.1e-80 302.0 600 37.8
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 8.1e-80 302.0 361 53.2
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.8e-79 300.8 337 54.9
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 5.3e-79 299.3 289 58.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 6.9e-79 298.9 556 39.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.0e-79 298.5 532 43.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 9.0e-79 298.5 611 38.5
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.6e-78 297.0 357 52.9
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.2e-77 293.9 626 36.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.9e-77 292.7 614 39.1
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.4e-76 290.4 627 35.6
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 7.1e-76 288.9 604 38.2
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.8e-75 285.4 256 64.1
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.7e-74 284.3 350 52.3
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.7e-74 284.3 602 36.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.0e-74 283.5 288 57.6
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.9e-74 283.1 629 35.6
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 8.7e-74 282.0 599 37.6
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.7e-74 282.0 369 48.5
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.1e-73 281.6 538 38.8
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.1e-73 281.6 335 51.9
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 3.3e-73 280.0 539 38.4
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 7.3e-73 278.9 608 38.3
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.1e-72 275.4 607 36.6
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 2.4e-71 273.9 572 36.2
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.1e-71 273.5 326 51.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.0e-71 273.1 280 55.0
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.0e-70 270.8 591 37.7
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.4e-70 270.0 313 53.0
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.3e-69 268.1 605 36.4
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-68 264.6 490 39.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.2e-67 261.5 281 54.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.6e-67 259.6 378 45.5
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.0e-66 258.5 591 36.5
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.3e-65 253.4 584 35.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.3e-65 253.4 622 34.2
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.3e-65 253.1 279 56.3
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.3e-65 253.1 279 56.3
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 7.4e-65 252.3 531 38.0
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 4.8e-64 249.6 562 35.2
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.4e-63 247.3 592 36.3
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 4.9e-61 239.6 623 33.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 6.4e-61 239.2 219 66.2
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 6.4e-61 239.2 565 36.3
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.5e-60 237.3 219 65.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.5e-60 237.3 289 49.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 7.4e-57 225.7 641 32.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-56 224.9 637 33.4
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-56 224.9 493 36.3
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 2.0e-54 217.6 316 45.9
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.2e-53 214.2 306 45.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.9e-53 213.0 335 43.6
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.9e-52 211.1 327 42.8
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.2e-52 209.9 330 44.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.1e-50 203.0 423 36.6
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.6e-48 198.0 531 33.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.8e-48 196.4 282 45.4
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 8.5e-45 185.7 534 29.8
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.9e-44 184.5 201 55.2
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.9e-44 184.5 273 43.6
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 9.4e-44 182.2 474 32.1
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 4.3e-41 173.3 303 39.6
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.7e-40 170.2 275 38.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.2e-40 169.1 236 41.9
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.5e-38 163.3 218 46.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.0e-34 152.1 240 35.8
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.4e-34 151.8 409 31.8
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.7e-33 146.4 292 36.3
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.3e-32 145.2 443 29.8
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.2e-32 144.4 173 54.9
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.8e-32 144.1 190 46.3
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 2.4e-31 141.0 427 31.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.5e-30 137.1 261 33.7
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.9e-28 131.3 122 63.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.3e-25 120.6 118 62.7
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 2.2e-24 117.9 241 33.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 8.2e-24 115.9 543 26.0
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.6e-22 111.7 187 40.6
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.9e-21 107.5 262 33.6
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 8.0e-19 99.4 91 59.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-18 98.6 225 36.0
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 5.2e-18 96.7 234 32.5
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-17 94.7 79 60.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 9.8e-17 92.4 94 56.4
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-16 92.0 176 39.8
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 9.1e-15 85.9 72 70.8
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.0e-14 84.7 170 34.7
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 3.5e-14 84.0 57 73.7
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.2e-11 75.5 48 72.9
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.6e-11 73.9 72 56.9
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.7e-11 73.6 96 46.9
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.4e-10 72.0 111 45.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.8e-10 69.3 100 48.0
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 8.8e-10 69.3 151 41.7
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 3.4e-09 67.4 79 49.4
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 5.7e-09 66.6 44 65.9
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 7.5e-09 66.2 69 50.7
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 9.8e-09 65.9 50 66.0
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.7e-08 65.1 123 45.5
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 6.3e-08 63.2 191 27.7
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.4e-07 62.0 187 31.6
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.8e-07 61.6 206 25.2
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 2.4e-07 61.2 297 26.9
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 2.4e-07 61.2 297 26.9
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 3.1e-07 60.8 50 56.0
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.1e-07 60.5 100 46.0
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 5.4e-07 60.1 51 68.6
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.6e-06 58.5 108 40.7
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.0e-06 58.2 101 34.7
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 3.5e-06 57.4 303 26.4
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 4.5e-06 57.0 48 66.7
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.9e-06 56.6 185 29.7


User provided reference genes

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