Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1758.0 948 100.0
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 0.0e+00 1758.0 948 100.0
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1732.2 948 98.4
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 0.0e+00 1732.2 948 98.4
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1693.7 938 97.9
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1597.0 954 91.3
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 0.0e+00 1373.2 962 80.8
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 0.0e+00 1342.8 963 76.8
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 0.0e+00 1338.9 970 80.0
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 0.0e+00 1331.2 970 79.8
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 0.0e+00 1325.1 966 77.3
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 0.0e+00 1295.0 967 76.3
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 1.7e-302 1042.7 1022 62.4
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 9.0e-288 993.8 998 59.5
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 4.3e-205 719.2 1084 45.3
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 1.3e-201 707.6 908 49.7
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 2.2e-201 706.8 842 51.7
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.7e-199 699.9 873 49.9
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 2.0e-194 683.7 851 51.2
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 3.2e-192 676.4 1031 44.8
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 7.8e-191 671.8 1003 45.4
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.8e-188 663.3 963 45.7
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 3.6e-188 662.9 1065 44.4
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.4e-187 661.0 970 46.7
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.4e-187 660.2 1037 44.0
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 1.2e-186 657.9 1010 45.5
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 5.8e-186 655.6 1064 43.8
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.7e-183 646.7 1005 44.3
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 6.6e-182 642.1 1043 44.0
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 2.6e-178 630.2 871 47.0
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 9.9e-178 628.2 1070 42.1
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 1.4e-176 624.4 1053 42.3
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 1.9e-176 624.0 1078 42.5
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 4.2e-176 622.9 863 46.0
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 6.0e-175 619.0 837 47.4
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 7.9e-175 618.6 968 43.2
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 1.3e-174 617.8 857 46.6
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.1e-173 614.8 957 44.8
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 3.3e-173 613.2 1048 42.3
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 3.7e-172 609.8 882 46.7
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 6.2e-172 609.0 948 44.6
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 6.2e-172 609.0 836 47.2
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 2.4e-171 607.1 997 42.5
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 9.0e-171 605.1 989 43.9
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.2e-170 604.7 954 44.9
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 5.8e-170 602.4 1076 41.8
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.0e-169 601.7 1088 40.8
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 1.7e-169 600.9 956 43.2
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 1.1e-168 598.2 816 47.2
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 1.1e-168 598.2 818 46.8
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 1.4e-168 597.8 880 46.1
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.9e-168 597.4 778 47.6
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 5.5e-168 595.9 993 42.1
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 5.1e-166 589.3 816 49.1
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.1e-165 588.2 796 48.0
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.3e-164 584.7 993 41.6
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 2.1e-164 583.9 937 44.7
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 2.8e-164 583.6 821 46.4
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 8.2e-164 582.0 1006 42.0
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 9.0e-163 578.6 966 42.3
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.2e-162 578.2 848 45.0
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.6e-162 577.0 782 46.8
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 3.4e-162 576.6 798 47.2
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 7.2e-160 568.9 866 44.1
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 1.8e-158 564.3 979 41.7
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.8e-158 564.3 890 42.6
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 2.8e-156 557.0 668 51.8
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 3.7e-156 556.6 1037 39.0
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 3.4e-154 550.1 797 45.7
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 7.7e-154 548.9 851 44.2
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 4.2e-152 543.1 1028 40.3
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 7.9e-151 538.9 1033 39.2
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 9.7e-149 531.9 1098 38.7
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 3.7e-148 530.0 1009 38.9
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.1e-147 528.5 1118 37.6
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 1.8e-147 527.7 996 40.8
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 1.5e-146 524.6 983 41.5
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 3.2e-144 516.9 918 42.3
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 5.5e-144 516.2 903 41.1
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 1.6e-143 514.6 999 39.7
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 6.7e-142 509.2 1028 39.1
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 7.0e-139 499.2 1025 38.0
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 1.2e-138 498.4 810 42.8
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 2.2e-137 494.2 789 43.0
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 5.0e-137 493.0 1048 37.0
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 7.2e-136 489.2 977 39.9
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.8e-134 484.6 1027 37.1
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 4.5e-130 469.9 714 45.0
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 5.0e-129 466.5 752 43.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.0e-126 458.8 865 39.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 3.0e-126 457.2 1028 35.1
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 1.5e-125 454.9 467 57.0
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 2.2e-124 451.1 817 39.0
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 3.1e-123 447.2 479 56.6
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 2.7e-119 434.1 826 36.8
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 5.2e-118 429.9 792 40.9
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 4.7e-111 406.8 820 38.2
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 6.1e-111 406.4 904 35.7
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 9.8e-109 399.1 392 57.9
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.2e-108 397.9 668 41.8
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.8e-107 394.8 924 35.1
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 7.8e-106 389.4 465 49.2
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 6.2e-95 353.2 465 48.2
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 1.7e-92 345.1 874 34.2
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.0e-82 310.1 293 58.0
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.5e-74 284.3 319 53.3
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 4.8e-71 273.9 333 48.3
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 1.6e-63 248.8 784 32.5
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 8.7e-57 226.5 221 57.0
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.1e-46 193.0 428 37.6
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 9.3e-43 179.9 161 64.6
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 2.7e-42 178.3 259 42.5
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 2.7e-42 178.3 256 45.3
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.5e-40 171.8 405 35.6
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.3e-38 164.1 560 28.8
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 6.9e-38 163.7 214 49.1
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 5.9e-37 160.6 171 55.0
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 6.1e-34 150.6 1022 23.7
BcaB01g02031 Brassica carinata HOM05D002567 ORTHO05D006538 2.4e-30 138.7 445 33.0
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 3.4e-29 134.8 217 41.9
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.7e-28 132.5 77 81.8
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.6e-26 124.8 151 47.7
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 7.0e-22 110.5 91 60.4
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 2.0e-21 109.0 392 28.6
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.5e-19 100.9 82 59.8
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 1.6e-18 99.4 237 30.4
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.4e-17 96.3 67 70.1
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 8.8e-17 93.6 111 49.5
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 6.3e-15 87.4 66 63.6
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.5e-13 81.3 53 71.7
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.1e-10 72.4 73 46.6
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.8e-09 69.3 271 25.8
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.2e-09 67.8 253 26.9
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 2.0e-08 65.9 139 33.1
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 8.3e-07 60.5 122 36.9
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.4e-06 59.7 111 43.2
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 1.4e-06 59.7 243 26.3
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 4.1e-06 58.2 85 37.6
CSS0044135 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 7.0e-06 57.4 71 45.1
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 7.0e-06 57.4 154 29.9
Potri.005G116001 Populus trichocarpa HOM05D002848 ORTHO05D003043 7.0e-06 57.4 102 37.3
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 7.0e-06 57.4 87 41.4
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 9.1e-06 57.0 79 44.3
MD02G1134000 Malus domestica HOM05D002848 ORTHO05D003043 9.1e-06 57.0 86 41.9


User provided reference genes

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