Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 1.4e-90 336.3 167 100.0
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 1.4e-90 336.3 167 100.0
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 1.4e-90 336.3 167 100.0
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 9.9e-89 330.1 167 98.2
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 9.9e-89 330.1 167 98.2
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 3.2e-79 298.5 163 90.8
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 4.9e-72 274.6 163 83.4
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 1.4e-71 273.1 163 83.4
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 1.2e-70 270.0 163 81.0
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 6.6e-69 264.2 163 79.1
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 2.5e-68 262.3 163 79.1
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 1.6e-67 259.6 167 76.6
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 3.6e-67 258.5 163 79.8
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 6.9e-66 254.2 163 77.9
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 2.6e-65 252.3 187 71.1
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 2.9e-64 248.8 163 75.5
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 1.2e-62 243.4 163 76.1
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 3.8e-56 221.9 153 72.5
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 2.0e-49 199.5 163 61.3
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 1.6e-43 179.9 115 68.7
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 2.8e-43 179.1 164 56.7
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 2.8e-43 179.1 124 67.7
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 8.2e-43 177.6 160 53.8
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.4e-42 176.8 169 52.7
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 6.9e-42 174.5 130 64.6
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.2e-41 173.7 127 62.2
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.2e-41 173.7 160 55.0
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 2.6e-41 172.6 168 55.4
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 3.4e-41 172.2 160 55.6
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 4.5e-41 171.8 127 63.8
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 4.5e-41 171.8 127 63.0
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 7.6e-41 171.0 170 54.7
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 1.0e-40 170.6 109 68.8
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 1.0e-40 170.6 109 68.8
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 2.2e-40 169.5 153 52.3
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 2.9e-40 169.1 130 61.5
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 2.9e-40 169.1 172 51.7
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 6.5e-40 167.9 127 57.5
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 1.1e-39 167.2 158 55.1
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.1e-39 167.2 136 61.0
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 1.9e-39 166.4 171 52.6
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 2.5e-39 166.0 152 53.3
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 2.5e-39 166.0 139 56.8
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 4.2e-39 165.2 127 58.3
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 4.2e-39 165.2 161 53.4
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 5.5e-39 164.9 162 51.9
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.2e-38 163.7 160 52.5
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 1.2e-38 163.7 162 52.5
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 1.2e-38 163.7 113 66.4
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.6e-38 163.3 164 51.8
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 1.6e-38 163.3 108 65.7
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 2.7e-38 162.5 167 49.7
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 3.6e-38 162.2 114 65.8
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 6.1e-38 161.4 112 63.4
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 6.1e-38 161.4 162 52.5
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 7.9e-38 161.0 112 67.0
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 7.9e-38 161.0 105 69.5
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 7.9e-38 161.0 128 60.2
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.0e-37 160.6 112 63.4
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 1.0e-37 160.6 128 59.4
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.8e-37 159.8 100 68.0
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 3.0e-37 159.1 163 52.1
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 3.9e-37 158.7 170 48.8
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 5.1e-37 158.3 105 65.7
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 6.7e-37 157.9 104 66.3
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 6.7e-37 157.9 115 64.3
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 8.8e-37 157.5 131 58.8
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 1.9e-36 156.4 117 63.2
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 2.5e-36 156.0 104 66.3
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 3.3e-36 155.6 170 47.1
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.3e-35 153.7 107 61.7
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 1.7e-35 153.3 101 67.3
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 4.8e-35 151.8 165 47.3
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 6.3e-35 151.4 154 50.0
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 8.2e-35 151.0 141 50.4
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 2.4e-34 149.4 100 64.0
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 5.3e-34 148.3 143 53.1
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 1.5e-33 146.7 106 67.0
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 3.4e-33 145.6 115 61.7
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 5.0e-32 141.7 97 64.9
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 5.5e-31 138.3 125 52.0
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 7.2e-31 137.9 192 44.8
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 1.2e-30 137.1 94 66.0
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 3.6e-30 135.6 138 48.6
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 6.1e-30 134.8 94 59.6
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.4e-29 133.7 91 63.7
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 1.8e-29 133.3 159 44.0
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 3.0e-29 132.5 102 62.7
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.5e-28 130.2 88 63.6
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 6.3e-27 124.8 151 45.0
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 6.3e-27 124.8 110 57.3
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 1.1e-26 124.0 102 54.9
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.1e-26 124.0 100 60.0
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 1.4e-26 123.6 117 46.2
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 1.8e-26 123.2 83 62.7
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 1.5e-25 120.2 154 44.2
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 1.7e-24 116.7 104 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 3.9e-21 105.5 140 43.6
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 2.2e-19 99.8 72 61.1
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 6.3e-19 98.2 69 65.2
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 4.7e-14 82.0 94 47.9
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 8.0e-14 81.3 56 64.3
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 1.1e-10 70.9 49 63.3
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 4.1e-10 68.9 174 33.3
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 5.3e-10 68.6 81 45.7
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 7.7e-09 64.7 89 42.7


User provided reference genes

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