Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p38510 Brassica napus HOM05D000108 ORTHO05D011597 3.2e-25 117.5 54 100.0
BcaC03g16087 Brassica carinata HOM05D000108 ORTHO05D018756 1.5e-22 108.6 51 94.1
BraA04t16829Z Brassica rapa HOM05D000108 ORTHO05D011597 4.4e-14 80.5 50 76.0
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 9.8e-14 79.3 47 78.7
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 9.8e-14 79.3 47 78.7
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 9.8e-14 79.3 47 78.7
A03p40640 Brassica napus HOM05D000108 ORTHO05D011597 1.3e-13 79.0 50 74.0
A06p15180 Brassica napus HOM05D000108 ORTHO05D011597 1.3e-13 79.0 50 74.0
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 2.2e-13 78.2 47 76.6
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 2.8e-13 77.8 47 74.5
A01p20150 Brassica napus HOM05D000108 ORTHO05D011597 4.9e-13 77.0 46 76.1
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 8.3e-13 76.3 47 72.3
Carub.0005s1169 Capsella rubella HOM05D000108 ORTHO05D001149 8.3e-13 76.3 47 72.3
AT3G45850 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.1e-12 75.9 47 70.2
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 1.1e-12 75.9 50 68.0
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 1.4e-12 75.5 47 76.6
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 1.4e-12 75.5 47 76.6
C03p00430 Brassica napus HOM05D000108 ORTHO05D011597 3.2e-12 74.3 51 72.5
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 5.4e-12 73.6 47 72.3
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 5.9e-11 70.1 47 68.1
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 7.8e-11 69.7 47 66.0
A07p08640 Brassica napus HOM05D000108 ORTHO05D011597 1.0e-10 69.3 45 68.9
A07p11270 Brassica napus HOM05D000108 ORTHO05D011597 1.0e-10 69.3 45 68.9
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 1.7e-10 68.6 47 63.8
BcaC08g43639 Brassica carinata HOM05D000108 ORTHO05D011597 6.6e-10 66.6 53 58.5
C06p10580 Brassica napus HOM05D000108 ORTHO05D011597 8.6e-10 66.2 47 63.8
C06p21290 Brassica napus HOM05D000108 ORTHO05D011597 1.9e-09 65.1 53 54.7
Manes.11G137400 Manihot esculenta HOM05D000108 ORTHO05D001149 1.9e-09 65.1 47 59.6
Nn2g12816 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.9e-09 65.1 47 61.7
BraA09t41241Z Brassica rapa HOM05D000108 ORTHO05D011597 2.5e-09 64.7 47 61.7
BolC6t37314H Brassica oleracea HOM05D000313 ORTHO05D011597 3.3e-09 64.3 52 55.8
Potri.009G026000 Populus trichocarpa HOM05D000108 ORTHO05D001149 3.3e-09 64.3 47 59.6
BcaB05g24316 Brassica carinata HOM05D000108 ORTHO05D011597 7.3e-09 63.2 47 59.6
Ciclev10027728m.g Citrus clementina HOM05D000108 ORTHO05D001149 7.3e-09 63.2 47 59.6
CANSAT54G1698 Cannabis sativa HOM05D000108 ORTHO05D001149 9.5e-09 62.8 50 56.0
Duzib168G1926 Durio zibethinus HOM05D000108 ORTHO05D001149 9.5e-09 62.8 48 56.2
Prupe.6G088500 Prunus persica HOM05D000108 ORTHO05D001149 9.5e-09 62.8 47 57.4
Atru.chr3.3778 Acer truncatum HOM05D000108 ORTHO05D001149 1.2e-08 62.4 47 57.4
MD11G1118200 Malus domestica HOM05D000108 ORTHO05D001149 1.2e-08 62.4 47 55.3
MD03G1105800 Malus domestica HOM05D000108 ORTHO05D001149 1.6e-08 62.0 47 55.3
Phvul.011G070000 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 1.6e-08 62.0 47 59.6
Potri.001G233700 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.6e-08 62.0 47 59.6
Actinidia37269 Actinidia chinensis HOM05D000108 ORTHO05D001149 2.1e-08 61.6 47 55.3
CiPaw.13G102700 Carya illinoinensis HOM05D000108 ORTHO05D001149 2.1e-08 61.6 46 58.7
Duzib170G0496 Durio zibethinus HOM05D000108 ORTHO05D001149 2.1e-08 61.6 47 57.4
Manes.04G028300 Manihot esculenta HOM05D000108 ORTHO05D001149 2.1e-08 61.6 55 54.5
TAR636G0183 Trochodendron aralioides HOM05D000108 ORTHO05D001149 2.1e-08 61.6 47 57.4
arahy.Tifrunner.gnm1.ann1.7B48AK Arachis hypogaea HOM05D000108 ORTHO05D001149 2.8e-08 61.2 50 52.0
CSS0041728 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 2.8e-08 61.2 47 57.4
Glyma.11G147108 Glycine max HOM05D000108 ORTHO05D001149 3.6e-08 60.8 46 58.7
arahy.Tifrunner.gnm1.ann1.QN0DU3 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.7e-08 60.5 47 53.2
Gohir.D03G131700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.7e-08 60.5 45 60.0
Gorai.003G138600 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.7e-08 60.5 45 60.0
Lj1A178T40 Lonicera japonica HOM05D000108 ORTHO05D001149 4.7e-08 60.5 47 55.3
Sed0002914 Sechium edule HOM05D000108 ORTHO05D001149 4.7e-08 60.5 46 58.7
Thecc.09G332700 Theobroma cacao HOM05D000108 ORTHO05D001149 4.7e-08 60.5 45 57.8
Actinidia07086 Actinidia chinensis HOM05D000108 ORTHO05D001149 6.1e-08 60.1 47 53.2
Cfa011412 Carpinus fangiana HOM05D000108 ORTHO05D001149 6.1e-08 60.1 46 56.5
Haze_23988 Corylus avellana HOM05D000108 ORTHO05D001149 6.1e-08 60.1 46 56.5
Haze_23992 Corylus avellana HOM05D000108 ORTHO05D001149 6.1e-08 60.1 46 56.5
Dinv02790 Davidia involucrata HOM05D000108 ORTHO05D001149 6.1e-08 60.1 47 55.3
PGR119G0104 Punica granatum HOM05D000108 ORTHO05D001149 6.1e-08 60.1 47 53.2
GSVIVG01025071001 Vitis vinifera HOM05D000108 ORTHO05D001149 6.1e-08 60.1 47 55.3
arahy.Tifrunner.gnm1.ann1.2070QL Arachis hypogaea HOM05D000108 ORTHO05D001149 8.0e-08 59.7 46 56.5
arahy.Tifrunner.gnm1.ann1.CITF9E Arachis hypogaea HOM05D000108 ORTHO05D001149 8.0e-08 59.7 46 56.5
Nn2g10569 Nelumbo nucifera HOM05D000108 ORTHO05D001149 8.0e-08 59.7 47 55.3
TWI31G0805 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 8.0e-08 59.7 47 57.4
TWI79G1415 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 8.0e-08 59.7 47 57.4
Migut.N02645 Erythranthe guttata HOM05D000108 ORTHO05D001149 1.0e-07 59.3 50 50.0
Hma1.2p1_2948F.1_g330680 Hydrangea macrophylla HOM05D000108 ORTHO05D018756 1.0e-07 59.3 47 57.4
COL.COLO4_18411 Corchorus olitorius HOM05D000108 ORTHO05D001149 1.4e-07 58.9 45 57.8
FvH4_3g34440 Fragaria vesca HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 51.1
FAN11G1183 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 51.1
FAN16G0704 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 51.1
FAN25G0698 Fragaria x ananassa HOM05D000108 ORTHO05D011597 1.4e-07 58.9 47 51.1
FAN25G2360 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 51.1
Glyma.13G330600 Glycine max HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 55.3
Glyma.15G043400 Glycine max HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 55.3
Lsat_1_v5_gn_8_76521 Lactuca sativa HOM05D000108 ORTHO05D001149 1.4e-07 58.9 50 54.0
Sabra16G0140000 Salix brachista HOM05D000108 ORTHO05D001149 1.4e-07 58.9 47 55.3
FAN21G0560 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.8e-07 58.5 47 48.9
Lj3g0021793 Lotus japonicus HOM05D000108 ORTHO05D001149 1.8e-07 58.5 47 55.3
QL01p035162 Quercus lobata HOM05D000108 ORTHO05D001149 1.8e-07 58.5 46 56.5
Rhsim13G0089400 Rhododendron simsii HOM05D000108 ORTHO05D001149 2.3e-07 58.2 46 54.3
Ca_01363_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 3.1e-07 57.8 47 53.2
Psat5g281840 Pisum sativum HOM05D000108 ORTHO05D001149 3.1e-07 57.8 47 53.2
SalBow3G2091 Salvia bowleyana HOM05D000108 ORTHO05D001149 3.1e-07 57.8 50 50.0
TPR.G11605 Trifolium pratense HOM05D000108 ORTHO05D001149 3.1e-07 57.8 47 53.2
vmacro03137 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 3.1e-07 57.8 45 55.6
Cc01_g12000 Coffea canephora HOM05D000108 ORTHO05D001149 4.0e-07 57.4 47 51.1
Phvul.L002157 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 4.0e-07 57.4 47 53.2
RcHm_v2.0_Chr5g0062081 Rosa chinensis HOM05D000108 ORTHO05D001149 4.0e-07 57.4 47 53.2
VMungo1080G1229 Vigna mungo HOM05D000108 ORTHO05D001149 4.0e-07 57.4 47 53.2
CDE09G0015 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 5.2e-07 57.0 45 53.3
Duzib150G0072 Durio zibethinus HOM05D000108 ORTHO05D001149 5.2e-07 57.0 47 55.3
Lalb_Chr14g0374921 Lupinus albus HOM05D000108 ORTHO05D001149 5.2e-07 57.0 47 51.1
Medtr2g096010 Medicago truncatula HOM05D000108 ORTHO05D001149 5.2e-07 57.0 47 53.2
Oeu062312.1 Olea europaea HOM05D000108 ORTHO05D001149 5.2e-07 57.0 50 50.0
VMungo1127G1903 Vigna mungo HOM05D000108 ORTHO05D001149 5.2e-07 57.0 46 56.5
Gohir.A03G036500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 6.8e-07 56.6 45 57.8
Oeu041005.1 Olea europaea HOM05D000108 ORTHO05D001149 6.8e-07 56.6 50 50.0
TAR633G1860 Trochodendron aralioides HOM05D000108 ORTHO05D001149 6.8e-07 56.6 47 53.2
ClCG03G001810 Citrullus lanatus HOM05D000108 ORTHO05D001149 8.9e-07 56.2 46 54.3
MELO3C020688.2 Cucumis melo HOM05D000108 ORTHO05D001149 8.9e-07 56.2 46 54.3
CsaV3_1G033760 Cucumis sativus L. HOM05D000108 ORTHO05D001149 8.9e-07 56.2 46 54.3
Gohir.A05G099500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 8.9e-07 56.2 47 55.3
Sed0013938 Sechium edule HOM05D000108 ORTHO05D001149 8.9e-07 56.2 46 54.3
Glyma.12G074300 Glycine max HOM05D000108 ORTHO05D001149 1.2e-06 55.8 46 54.3
SGA_v2.0_scaffold104G30113 Striga asiatica HOM05D000108 ORTHO05D001149 1.5e-06 55.5 50 46.0
CAN.G394.9 Capsicum annuum HOM05D000108 ORTHO05D001149 2.0e-06 55.1 45 51.1
MBI14_g42160_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 2.0e-06 55.1 45 53.3
Nitab4.5_0000182g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.0e-06 55.1 45 51.1
Nitab4.5_0000270g0170 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.0e-06 55.1 45 51.1
C01p46310 Brassica napus HOM05D000108 ORTHO05D011597 2.6e-06 54.7 33 72.7
C01p46760 Brassica napus HOM05D000108 ORTHO05D011597 2.6e-06 54.7 33 72.7
BolC1t04593H Brassica oleracea HOM05D000108 ORTHO05D011597 2.6e-06 54.7 33 72.7
BolC1t04594H Brassica oleracea HOM05D000108 ORTHO05D011597 2.6e-06 54.7 33 72.7
BolC1t04648H Brassica oleracea HOM05D000108 ORTHO05D011597 2.6e-06 54.7 33 72.7
Oeu058513.1 Olea europaea HOM05D000108 ORTHO05D001149 2.6e-06 54.7 50 48.0
Peaxi162Scf00072g00021 Petunia axillaris HOM05D000108 ORTHO05D001149 2.6e-06 54.7 45 51.1
Hund05022 Selenicereus undatus HOM05D000108 ORTHO05D001149 2.6e-06 54.7 47 53.2
CDE02G1599 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 3.4e-06 54.3 45 53.3
Gohir.D05G099400 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.4e-06 54.3 47 55.3
Gorai.009G103300 Gossypium raimondii HOM05D000108 ORTHO05D001149 3.4e-06 54.3 47 55.3
Hma1.2p1_0700F.1_g205780 Hydrangea macrophylla HOM05D000108 ORTHO05D018756 3.4e-06 54.3 47 53.2
Lalb_Chr19g0137571 Lupinus albus HOM05D000108 ORTHO05D001149 3.4e-06 54.3 45 53.3
Lalb_Chr22g0350061 Lupinus albus HOM05D000108 ORTHO05D001149 3.4e-06 54.3 47 48.9
Os05g0117798 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001149 3.4e-06 54.3 48 45.8
MSTRG.17848 Avicennia marina HOM05D000108 ORTHO05D001149 9.8e-06 52.8 54 51.9
BraA07t28653Z Brassica rapa HOM05D000108 ORTHO05D011597 9.8e-06 52.8 33 69.7
BraA09t38068Z Brassica rapa HOM05D000108 ORTHO05D011597 9.8e-06 52.8 33 69.7
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 9.8e-06 52.8 46 52.2
Sopen06g031970 Solanum pennellii HOM05D000108 ORTHO05D001149 9.8e-06 52.8 45 51.1


User provided reference genes

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