Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 3.2e-93 345.1 181 100.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 3.2e-93 345.1 181 100.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 9.3e-93 343.6 181 99.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 3.2e-61 238.8 262 58.4
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 4.2e-61 238.4 262 58.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 5.5e-61 238.0 262 58.8
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 5.5e-61 238.0 262 58.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-60 236.5 262 58.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.6e-60 235.3 266 57.5
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.7e-60 235.0 262 58.0
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.3e-59 232.6 265 57.0
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 4.0e-59 231.9 266 57.1
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 5.7e-58 228.0 262 56.1
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.7e-57 225.3 265 55.5
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 2.7e-55 219.2 269 54.3
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 8.5e-54 214.2 247 56.7
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.5e-53 212.6 247 56.3
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 3.6e-52 208.8 252 55.6
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 3.6e-52 208.8 252 55.6
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 3.5e-47 192.2 225 54.2
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.5e-45 186.0 271 46.5
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 4.0e-43 178.7 268 45.1
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 6.8e-43 177.9 267 43.8
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 2.0e-42 176.4 265 44.5
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 4.4e-42 175.3 266 44.0
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 7.5e-42 174.5 265 43.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.7e-41 173.3 267 43.8
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.1e-40 170.6 265 43.4
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.1e-40 168.7 197 55.3
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.1e-40 168.7 197 55.3
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.2e-39 167.2 265 43.4
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.6e-39 166.8 266 43.2
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.7e-39 166.0 264 42.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.5e-39 165.6 189 50.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 4.5e-39 165.2 264 42.4
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.0e-38 164.1 267 42.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.7e-38 163.3 265 41.1
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.7e-38 163.3 267 43.4
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.3e-38 162.9 264 42.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.9e-38 162.5 261 43.3
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.1e-37 160.6 266 41.7
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.9e-37 159.8 265 44.2
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.3e-37 159.1 261 42.5
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.3e-37 159.1 261 42.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.3e-37 159.1 261 41.4
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 3.3e-37 159.1 266 42.9
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 7.3e-37 157.9 261 42.1
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.3e-37 157.9 261 42.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 9.5e-37 157.5 265 43.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 9.5e-37 157.5 265 40.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-36 156.4 262 42.0
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-36 156.4 262 42.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 2.8e-36 156.0 261 41.8
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 6.1e-36 154.8 265 42.3
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.1e-36 154.8 265 40.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 8.0e-36 154.5 261 40.6
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 8.0e-36 154.5 265 41.9
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-35 154.1 265 40.0
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.8e-35 153.3 263 40.3
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.8e-35 153.3 261 43.3
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.3e-35 152.9 248 42.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.3e-35 152.9 264 41.3
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.1e-35 152.5 263 43.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 4.0e-35 152.1 262 40.1
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 5.2e-35 151.8 262 40.5
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 5.2e-35 151.8 264 40.9
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 6.8e-35 151.4 260 41.2
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 8.9e-35 151.0 265 41.9
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.0e-34 149.8 273 40.7
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.0e-34 149.8 273 40.7
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.0e-34 149.8 273 40.7
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.6e-34 149.4 268 39.2
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 7.5e-34 147.9 267 41.9
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 7.5e-34 147.9 267 40.4
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.7e-33 146.7 265 38.9
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 2.9e-33 146.0 264 42.0
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.7e-33 145.6 267 40.8
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 3.7e-33 145.6 258 38.8
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.2e-31 140.6 266 37.6
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.6e-31 140.2 268 39.2
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.0e-30 137.5 220 40.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 3.9e-30 135.6 265 39.6
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 8.6e-30 134.4 114 62.3
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 8.6e-30 134.4 224 42.4
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.1e-29 134.0 220 40.5
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.5e-29 132.9 111 62.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 4.3e-29 132.1 242 38.0
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.3e-29 132.1 116 60.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 4.3e-29 132.1 272 37.5
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 5.6e-29 131.7 111 63.1
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 9.5e-29 131.0 115 57.4
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 9.5e-29 131.0 114 59.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.2e-28 130.6 305 34.8
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.2e-28 130.6 179 42.5
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 6.2e-28 128.3 271 36.5
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.1e-27 127.5 114 58.8
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.1e-27 127.5 114 58.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 5.2e-27 125.2 114 57.9
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 8.9e-27 124.4 119 58.0
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 2.0e-26 123.2 114 57.9
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 7.5e-26 121.3 117 56.4
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.2e-25 119.8 114 54.4
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 2.2e-25 119.8 235 35.7
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 6.4e-25 118.2 114 58.8
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.9e-24 116.7 113 57.5
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 2.4e-24 116.3 115 53.9
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.4e-24 115.2 193 40.9
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 9.2e-24 114.4 115 52.2
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 6.6e-22 108.2 122 48.4
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.3e-21 105.5 113 53.1
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 4.3e-21 105.5 254 34.3
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 9.5e-21 104.4 220 34.5
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.1e-19 100.9 190 34.7
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.1e-19 100.9 244 32.0
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.5e-18 97.1 72 61.1
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.6e-18 96.3 229 31.4
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 3.4e-18 95.9 112 48.2
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 9.9e-18 94.4 155 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.7e-17 92.4 166 34.9
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 9.2e-16 87.8 71 64.8
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 6.6e-14 81.6 70 50.0
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.4e-11 73.9 70 47.1
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.8e-11 73.6 50 62.0
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 9.9e-10 67.8 83 55.4
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.9e-09 66.2 85 48.2
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.4e-08 63.2 85 47.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.0e-06 56.2 97 36.1


User provided reference genes

Program Settings