Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.2e-184 648.3 325 100.0
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.5e-181 639.4 337 96.4
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.4e-179 632.1 325 97.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.0e-179 631.3 324 97.2
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 5.3e-179 630.9 325 96.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.9e-165 585.9 331 92.1
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.6e-151 539.7 325 82.5
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 2.3e-150 535.8 317 86.1
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 5.7e-149 531.2 324 82.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.8e-148 528.1 329 80.9
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.9e-144 516.2 325 80.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.0e-142 508.8 320 80.3
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.2e-135 486.9 320 76.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 3.2e-128 462.2 321 73.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 4.0e-126 455.3 319 72.4
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.3e-125 452.2 320 72.8
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.8e-124 449.1 317 71.3
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.0e-123 444.5 327 69.1
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.7e-122 442.6 327 68.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.3e-121 440.3 320 68.8
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.7e-121 439.9 318 71.1
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 8.5e-121 437.6 322 68.0
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.9e-120 436.4 317 71.3
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.5e-120 434.9 317 71.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 5.5e-120 434.9 327 67.9
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 3.6e-119 432.2 318 70.1
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.7e-119 431.8 317 71.3
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.0e-118 430.6 324 66.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.4e-118 430.3 316 67.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-118 430.3 316 67.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.8e-118 429.9 316 67.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.3e-118 429.5 316 67.4
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 3.0e-118 429.1 329 65.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.8e-118 427.9 316 67.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.8e-118 427.6 324 67.3
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 8.8e-118 427.6 321 67.9
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-117 427.2 316 67.4
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 2.0e-117 426.4 319 69.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.6e-117 426.0 316 67.4
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 4.4e-117 425.2 320 69.4
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.2e-116 422.9 320 65.9
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.8e-116 422.5 329 66.3
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.7e-116 422.2 319 67.1
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 3.7e-116 422.2 317 67.5
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 6.3e-116 421.4 329 66.3
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.1e-115 420.6 321 69.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.1e-115 420.6 316 68.4
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.8e-115 419.9 315 67.6
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 5.4e-115 418.3 321 67.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 7.0e-115 417.9 321 68.8
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 9.1e-115 417.5 241 85.9
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 9.1e-115 417.5 316 68.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 9.1e-115 417.5 321 65.7
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.2e-114 417.2 321 65.7
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.6e-114 416.8 324 66.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.6e-114 416.8 320 66.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.0e-114 416.4 361 61.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.0e-114 416.4 321 65.4
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.0e-114 416.4 330 64.8
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.7e-114 416.0 322 65.5
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.5e-114 415.6 317 66.6
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 4.5e-114 415.2 322 63.7
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.0e-113 414.1 326 63.8
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.3e-113 413.7 318 66.4
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.3e-113 413.7 322 66.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.3e-113 413.7 321 64.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 5.0e-113 411.8 312 67.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 5.0e-113 411.8 318 65.4
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.5e-113 411.4 326 65.6
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.1e-112 410.6 318 65.7
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.9e-112 409.8 323 64.4
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-112 409.8 318 65.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.5e-112 409.5 316 66.8
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 3.6e-111 405.6 313 65.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.7e-111 405.2 317 65.3
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 8.0e-111 404.4 316 65.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.0e-110 404.1 317 64.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.0e-110 404.1 322 63.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 2.3e-110 402.9 344 61.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.8e-110 401.0 324 64.2
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 8.8e-110 401.0 318 63.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.2e-109 400.6 325 63.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.7e-108 396.7 313 64.2
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.2e-108 396.4 319 64.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.8e-108 396.0 317 63.7
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 6.3e-108 394.8 279 72.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 6.3e-108 394.8 322 62.1
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.4e-107 393.7 380 55.5
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.3e-105 387.1 346 58.7
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.9e-104 383.3 315 62.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.9e-104 383.3 320 62.8
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.5e-104 382.9 290 66.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.0e-102 375.9 262 71.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 4.0e-102 375.6 313 61.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.9e-100 369.4 315 61.3
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.9e-100 368.6 317 59.3
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.2e-98 364.0 281 64.8
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-96 356.3 243 72.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 9.5e-96 354.4 274 65.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.0e-94 349.0 248 70.2
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.6e-93 346.3 297 60.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.3e-88 328.9 248 67.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.1e-87 326.6 315 55.2
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.1e-86 324.3 318 51.9
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.9e-83 313.5 233 67.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-79 300.4 242 64.0
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 3.6e-79 299.3 313 54.3
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.4e-77 292.7 205 71.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-75 287.0 243 63.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.1e-75 285.8 250 59.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.2e-71 271.9 237 59.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-70 269.2 242 59.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 7.3e-64 248.4 188 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.4e-61 239.6 303 44.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-55 221.1 185 60.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.8e-54 217.2 190 60.5
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.1e-46 191.4 309 39.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 2.5e-43 180.3 133 65.4
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 7.1e-43 178.7 322 39.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.9e-37 159.1 319 36.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.5e-35 152.5 133 59.4
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.6e-34 149.8 125 64.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-32 143.7 109 67.9
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-29 134.8 112 60.7
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 57.5
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 57.5
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 57.5
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.2e-26 124.8 131 52.7
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 7.9e-26 122.1 81 76.5
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.0e-24 117.5 90 62.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.7e-23 114.4 80 73.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.8e-22 110.9 103 51.5
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-14 85.1 54 72.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 2.6e-13 80.5 83 53.0
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-12 78.6 73 52.1
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-09 67.4 58 55.2
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 2.2e-07 60.8 43 65.1
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-07 60.8 58 53.4
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-07 60.8 58 53.4
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-06 57.4 43 67.4


User provided reference genes

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