Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 2.6e-28 128.3 77 100.0
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 2.6e-28 128.3 77 88.3
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 4.9e-27 124.0 77 97.4
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 1.0e-24 116.3 77 84.4
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 3.9e-24 114.4 93 80.6
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 5.0e-19 97.4 77 81.8
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 5.0e-19 97.4 77 81.8
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 5.0e-19 97.4 77 81.8
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 5.0e-19 97.4 77 81.8
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 3.2e-18 94.7 77 81.8
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 7.9e-17 90.1 77 84.4
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 4.3e-15 84.3 77 80.5
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 5.7e-15 84.0 77 79.2
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 4.8e-14 80.9 77 76.6
BolC9t57615H Brassica oleracea HOM05D003549 ORTHO05D039484 8.2e-14 80.1 77 76.6
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.4e-12 74.7 77 71.4
BcaC03g16026 Brassica carinata HOM05D000138 ORTHO05D032649 7.7e-12 73.6 46 100.0
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.7e-12 73.6 70 74.3
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.2e-11 72.0 75 74.7
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.8e-11 71.2 77 64.9
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 3.8e-11 71.2 77 68.8
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 3.8e-11 71.2 69 73.9
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.8e-11 71.2 70 71.4
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.8e-11 71.2 69 68.1
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 5.0e-11 70.9 78 66.7
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 6.5e-11 70.5 76 73.7
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 8.5e-11 70.1 77 63.6
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 8.5e-11 70.1 77 67.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 8.5e-11 70.1 77 64.9
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 8.5e-11 70.1 70 67.1
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.1e-10 69.7 70 70.0
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.4e-10 69.3 77 58.4
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.9e-10 68.9 77 70.1
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.9e-10 68.9 74 67.6
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.5e-10 68.6 77 68.8
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 68.6
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 67.1
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 65.7
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.2e-10 68.2 78 64.1
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.2e-10 68.2 78 64.1
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.2e-10 68.2 69 72.5
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 4.2e-10 67.8 69 72.5
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 4.2e-10 67.8 69 72.5
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 4.2e-10 67.8 78 66.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 5.5e-10 67.4 78 70.5
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 5.5e-10 67.4 77 68.8
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 5.5e-10 67.4 77 68.8
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 5.5e-10 67.4 77 68.8
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 5.5e-10 67.4 70 64.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 5.5e-10 67.4 69 68.1
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 5.5e-10 67.4 69 72.5
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 5.5e-10 67.4 77 55.8
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 5.5e-10 67.4 74 64.9
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.5e-10 67.4 74 64.9
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 5.5e-10 67.4 77 67.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.5e-10 67.4 78 66.7
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 7.2e-10 67.0 50 78.0
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 7.2e-10 67.0 70 65.7
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 7.2e-10 67.0 69 69.6
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 7.2e-10 67.0 72 61.1
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 7.2e-10 67.0 78 60.3
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 9.4e-10 66.6 74 66.2
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.4e-10 66.6 74 66.2
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-09 66.2 74 64.9
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-09 66.2 74 64.9
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-09 66.2 74 64.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.2e-09 66.2 78 65.4
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.1e-09 65.5 77 67.5
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.1e-09 65.5 72 59.7
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.1e-09 65.5 77 63.6
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.7e-09 65.1 69 71.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 2.7e-09 65.1 77 55.8
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 3.6e-09 64.7 77 63.6
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 4.6e-09 64.3 70 65.7
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 4.6e-09 64.3 69 69.6
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 6.1e-09 63.9 73 69.9
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 6.1e-09 63.9 75 57.3
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 6.1e-09 63.9 70 72.9
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 7.9e-09 63.5 67 64.2
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 7.9e-09 63.5 69 65.2
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 7.9e-09 63.5 78 67.9
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.9e-09 63.5 75 54.7
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.9e-09 63.5 69 69.6
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.9e-09 63.5 69 69.6
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-08 63.2 70 64.3
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.0e-08 63.2 69 66.7
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.0e-08 63.2 71 62.0
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.4e-08 62.8 69 69.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 1.4e-08 62.8 69 60.9
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.4e-08 62.8 69 55.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.8e-08 62.4 70 68.6
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.8e-08 62.4 70 68.6
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 1.8e-08 62.4 70 67.1
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 1.8e-08 62.4 69 63.8
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.8e-08 62.4 69 68.1
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.8e-08 62.4 70 68.6
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.8e-08 62.4 75 54.7
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.8e-08 62.4 75 54.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 1.8e-08 62.4 77 59.7
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.0e-08 61.6 77 59.7
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 3.0e-08 61.6 78 52.6
BcaC04g20105 Brassica carinata HOM05D003549 ORTHO05D039484 6.7e-08 60.5 77 63.6
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 6.7e-08 60.5 70 67.1
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 6.7e-08 60.5 70 64.3
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 8.8e-08 60.1 72 66.7
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 8.8e-08 60.1 70 65.7
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.8e-08 60.1 75 52.0
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.1e-07 59.7 79 54.4
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.1e-07 59.7 118 50.8
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 70 62.9
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 70 62.9
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 70 62.9
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 70 62.9
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.1e-07 59.7 74 64.9
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.5e-07 59.3 69 52.2
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.5e-07 59.3 49 69.4
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.5e-07 59.3 71 67.6
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.0e-07 58.9 72 58.3
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 2.0e-07 58.9 68 54.4
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.0e-07 58.9 70 57.1
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.0e-07 58.9 76 59.2
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 2.6e-07 58.5 70 62.9
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.6e-07 58.5 70 62.9
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.6e-07 58.5 77 61.0
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 2.6e-07 58.5 77 62.3
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.6e-07 58.5 77 61.0
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 4.4e-07 57.8 50 64.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 4.4e-07 57.8 77 50.6
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.7e-07 57.4 69 65.2
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.7e-07 57.4 78 62.8
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 5.7e-07 57.4 78 62.8
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 7.4e-07 57.0 70 68.6
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.7e-06 55.8 74 55.4
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.2e-06 55.5 118 47.5
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.2e-06 55.5 75 62.7
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 2.8e-06 55.1 79 57.0
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.8e-06 54.3 69 49.3
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 6.3e-06 53.9 76 61.8
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 6.3e-06 53.9 77 62.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 8.2e-06 53.5 78 65.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 8.2e-06 53.5 78 61.5


User provided reference genes

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