Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16012 Brassica carinata HOM05D002960 ORTHO05D024096 1.3e-42 176.0 92 100.0
C02p37670 Brassica napus HOM05D002960 ORTHO05D024096 1.3e-42 176.0 92 100.0
BraA02t07381Z Brassica rapa HOM05D002960 ORTHO05D024096 6.5e-26 120.6 92 75.0
Aa31LG4G250 Aethionema arabicum HOM05D002960 ORTHO05D003632 4.2e-17 91.3 83 69.9
C06p28790 Brassica napus HOM05D002960 ORTHO05D003632 6.1e-16 87.4 63 79.4
TAR636G2825 Trochodendron aralioides HOM05D002960 ORTHO05D003632 1.8e-15 85.9 85 58.8
CSS0002001 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 3.0e-15 85.1 79 65.8
Actinidia03141 Actinidia chinensis HOM05D002960 ORTHO05D003632 5.2e-15 84.3 85 58.8
THA.LOC104811944 Tarenaya hassleriana HOM05D002960 ORTHO05D003632 1.2e-14 83.2 62 69.4
CiPaw.04G140400 Carya illinoinensis HOM05D002960 ORTHO05D003632 1.5e-14 82.8 81 63.0
A07p26400 Brassica napus HOM05D002960 ORTHO05D003632 2.6e-14 82.0 63 76.2
BraA07t30284Z Brassica rapa HOM05D002960 ORTHO05D003632 2.6e-14 82.0 63 76.2
BolC6t38049H Brassica oleracea HOM05D002960 ORTHO05D003632 1.3e-13 79.7 63 74.6
CiPaw.03G199900 Carya illinoinensis HOM05D002960 ORTHO05D003632 1.7e-13 79.3 88 58.0
PGR042G1381 Punica granatum HOM05D002960 ORTHO05D003632 1.1e-12 76.6 83 60.2
AL2G41600 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 3.1e-12 75.1 87 56.3
MD01G1210000 Malus domestica HOM05D002960 ORTHO05D003632 3.1e-12 75.1 83 56.6
Potri.004G072200 Populus trichocarpa HOM05D002960 ORTHO05D003632 4.1e-12 74.7 45 84.4
QL11p003257 Quercus lobata HOM05D002960 ORTHO05D003632 9.2e-12 73.6 86 54.7
Gohir.D12G255700 Gossypium hirsutum HOM05D002960 ORTHO05D003632 1.2e-11 73.2 46 78.3
Gorai.008G273800 Gossypium raimondii HOM05D002960 ORTHO05D003632 1.2e-11 73.2 46 78.3
Potri.017G148800 Populus trichocarpa HOM05D002960 ORTHO05D003632 1.2e-11 73.2 46 76.1
Sabra04G0047600 Salix brachista HOM05D002960 ORTHO05D003632 1.2e-11 73.2 45 82.2
Duzib205G1208 Durio zibethinus HOM05D002960 ORTHO05D003632 2.0e-11 72.4 87 50.6
Gohir.A12G253400 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.7e-11 72.0 46 76.1
Gohir.D04G102900 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.7e-11 72.0 46 73.9
Gorai.009G406200 Gossypium raimondii HOM05D002960 ORTHO05D003632 2.7e-11 72.0 46 73.9
CSS0035474 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 3.5e-11 71.6 56 71.4
ATR0564G109 Amborella trichopoda HOM05D002960 ORTHO05D003632 4.5e-11 71.2 95 50.5
Gohir.A04G065342 Gossypium hirsutum HOM05D002960 ORTHO05D003632 5.9e-11 70.9 46 71.7
Manes.06G153311 Manihot esculenta HOM05D002960 ORTHO05D003632 5.9e-11 70.9 100 53.0
Os04g0307200 Oryza sativa ssp. japonica HOM05D002960 ORTHO05D003632 5.9e-11 70.9 45 73.3
Sabra17G0124100 Salix brachista HOM05D002960 ORTHO05D003632 5.9e-11 70.9 46 73.9
CSS0012044 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 7.8e-11 70.5 46 76.1
DCAR_020274 Daucus carota HOM05D002960 ORTHO05D003632 7.8e-11 70.5 93 50.5
Dinv09615 Davidia involucrata HOM05D002960 ORTHO05D003632 7.8e-11 70.5 46 78.3
Prupe.2G302300 Prunus persica HOM05D002960 ORTHO05D003632 7.8e-11 70.5 46 71.7
TAR627G0210 Trochodendron aralioides HOM05D002960 ORTHO05D003632 7.8e-11 70.5 100 49.0
Duzib084G0224 Durio zibethinus HOM05D002960 ORTHO05D003632 1.0e-10 70.1 46 76.1
Psat1g137760 Pisum sativum HOM05D002960 ORTHO05D003632 1.0e-10 70.1 45 71.1
TPR.G20789 Trifolium pratense HOM05D002960 ORTHO05D003632 1.0e-10 70.1 81 53.1
BcaC08g47593 Brassica carinata HOM05D002960 ORTHO05D024096 1.3e-10 69.7 62 64.5
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.3e-10 69.7 62 64.5
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.3e-10 69.7 62 64.5
Sp5g35840 Schrenkiella parvula HOM05D002960 ORTHO05D003632 1.3e-10 69.7 33 97.0
MD07G1280100 Malus domestica HOM05D002960 ORTHO05D003632 1.7e-10 69.3 46 71.7
Thecc.03G185900 Theobroma cacao HOM05D002960 ORTHO05D003632 1.7e-10 69.3 87 55.2
CsaV3_3G017580 Cucumis sativus L. HOM05D002960 ORTHO05D003632 2.3e-10 68.9 46 69.6
ClCG05G008490 Citrullus lanatus HOM05D002960 ORTHO05D003632 2.9e-10 68.6 46 69.6
HanXRQChr07g0202321 Helianthus annuus HOM05D002960 ORTHO05D003632 2.9e-10 68.6 45 68.9
Sed0001248 Sechium edule HOM05D002960 ORTHO05D003632 2.9e-10 68.6 46 69.6
Cpa.g.sc107.126 Carica papaya HOM05D002960 ORTHO05D003632 3.8e-10 68.2 46 71.7
Ciclev10030891m.g Citrus clementina HOM05D002960 ORTHO05D003632 5.0e-10 67.8 45 68.9
Dinv35266 Davidia involucrata HOM05D002960 ORTHO05D003632 5.0e-10 67.8 46 76.1
Hma1.2p1_0084F.1_g043400 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 5.0e-10 67.8 46 69.6
Actinidia08427 Actinidia chinensis HOM05D002960 ORTHO05D003632 6.6e-10 67.4 46 73.9
Aqoxy1G00557 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 6.6e-10 67.4 46 69.6
CARHR074540 Cardamine hirsuta HOM05D002960 ORTHO05D003632 6.6e-10 67.4 33 90.9
Cfa019929 Carpinus fangiana HOM05D002960 ORTHO05D003632 6.6e-10 67.4 45 71.1
Haze_05396 Corylus avellana HOM05D002960 ORTHO05D003632 6.6e-10 67.4 45 71.1
Dinv21238 Davidia involucrata HOM05D002960 ORTHO05D003632 6.6e-10 67.4 46 71.7
Thhalv10018223m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 6.6e-10 67.4 33 90.9
Sed0004875 Sechium edule HOM05D002960 ORTHO05D003632 6.6e-10 67.4 46 67.4
Atru.chr8.1225 Acer truncatum HOM05D002960 ORTHO05D003632 8.6e-10 67.0 45 73.3
Carub.0002s2756 Capsella rubella HOM05D002960 ORTHO05D003632 8.6e-10 67.0 33 90.9
COL.COLO4_30293 Corchorus olitorius HOM05D002960 ORTHO05D003632 8.6e-10 67.0 46 69.6
Hma1.2p1_1713F.1_g298870 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 8.6e-10 67.0 46 73.9
Nn1g01680 Nelumbo nucifera HOM05D002960 ORTHO05D003632 8.6e-10 67.0 46 69.6
AUR62021103 Chenopodium quinoa HOM05D002960 ORTHO05D003632 1.1e-09 66.6 46 69.6
ECA232G0210 Erigeron canadensis HOM05D002960 ORTHO05D003632 1.1e-09 66.6 45 68.9
Manes.14G021200 Manihot esculenta HOM05D002960 ORTHO05D003632 1.1e-09 66.6 46 69.6
RcHm_v2.0_Chr1g0378591 Rosa chinensis HOM05D002960 ORTHO05D003632 1.1e-09 66.6 51 62.7
CANSAT11G1379 Cannabis sativa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 104 47.1
FvH4_7g30440 Fragaria vesca HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
FAN01G2731 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
FAN03G0384 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
FAN03G1579 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
FAN06G3309 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
FAN06G4953 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 46 65.2
COL.COLO4_29794 Corchorus olitorius HOM05D002960 ORTHO05D003632 1.9e-09 65.9 45 71.1
Hund11709 Selenicereus undatus HOM05D002960 ORTHO05D003632 1.9e-09 65.9 99 44.4
Duzib106G0653 Durio zibethinus HOM05D002960 ORTHO05D003632 2.5e-09 65.5 46 67.4
FAN10G1974 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.5e-09 65.5 62 58.1
FAN10G3414 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.5e-09 65.5 62 58.1
Glyma.09G075400 Glycine max HOM05D002960 ORTHO05D003632 2.5e-09 65.5 50 62.0
SalBow4G0209 Salvia bowleyana HOM05D002960 ORTHO05D003632 2.5e-09 65.5 99 50.5
Lalb_Chr11g0073951 Lupinus albus HOM05D002960 ORTHO05D003632 3.3e-09 65.1 46 63.0
Phvul.009G223000 Phaseolus vulgaris HOM05D002960 ORTHO05D003632 3.3e-09 65.1 46 63.0
VMungo1309G1262 Vigna mungo HOM05D002960 ORTHO05D003632 3.3e-09 65.1 46 63.0
Actinidia05449 Actinidia chinensis HOM05D002960 ORTHO05D003632 4.3e-09 64.7 46 69.6
BcaC08g47563 Brassica carinata HOM05D002960 ORTHO05D095078 4.3e-09 64.7 52 76.9
Medtr2g044580 Medicago truncatula HOM05D002960 ORTHO05D003632 4.3e-09 64.7 46 65.2
Sc13g0009270 Simmondsia chinensis HOM05D002960 ORTHO05D003632 4.3e-09 64.7 44 70.5
Ah.05g171480 Amaranthus hybridus HOM05D002960 ORTHO05D003632 5.6e-09 64.3 46 65.2
Zm00001eb086520 Zea mays HOM05D002960 ORTHO05D003632 5.6e-09 64.3 46 69.6
AT1G79940 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 7.3e-09 63.9 33 84.8
DCAR_008897 Daucus carota HOM05D002960 ORTHO05D003632 7.3e-09 63.9 86 48.8
Ah.15g089750 Amaranthus hybridus HOM05D002960 ORTHO05D003632 9.5e-09 63.5 46 65.2
Ah.15g089760 Amaranthus hybridus HOM05D002960 ORTHO05D003632 9.5e-09 63.5 46 65.2
Ah.15g089770 Amaranthus hybridus HOM05D002960 ORTHO05D003632 9.5e-09 63.5 46 65.2
Aqoxy3G00494 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 1.2e-08 63.2 43 69.8
vmacro14679 Vaccinium macrocarpon HOM05D002960 ORTHO05D003632 1.2e-08 63.2 46 73.9
Ca_02287_v3 Cicer arietinum L. HOM05D002960 ORTHO05D003632 1.6e-08 62.8 46 63.0
Glyma.15G183400 Glycine max HOM05D002960 ORTHO05D003632 1.6e-08 62.8 46 63.0
Lj2A132T53 Lonicera japonica HOM05D002960 ORTHO05D003632 1.6e-08 62.8 101 45.5
Nitab4.5_0000472g0060 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.6e-08 62.8 45 60.0
Cc06_g05410 Coffea canephora HOM05D002960 ORTHO05D003632 2.1e-08 62.4 46 65.2
Lj1A1006G38 Lonicera japonica HOM05D002960 ORTHO05D003632 2.1e-08 62.4 35 82.9
Lj6g0018011 Lotus japonicus HOM05D002960 ORTHO05D003632 2.1e-08 62.4 46 58.7
PSO266G0049 Papaver somniferum HOM05D002960 ORTHO05D003632 2.1e-08 62.4 99 42.4
EL10Ac3g05404 Beta vulgaris HOM05D002960 ORTHO05D003632 2.8e-08 62.0 55 65.5
PSO478G2229 Papaver somniferum HOM05D002960 ORTHO05D003632 3.6e-08 61.6 99 42.4
Lalb_Chr08g0232801 Lupinus albus HOM05D002960 ORTHO05D003632 4.7e-08 61.2 46 58.7
Haze_26075 Corylus avellana HOM05D002960 ORTHO05D003632 6.1e-08 60.8 46 63.0
Lalb_Chr23g0276131 Lupinus albus HOM05D002960 ORTHO05D003632 6.1e-08 60.8 46 58.7
Oeu040525.2 Olea europaea HOM05D002960 ORTHO05D003632 6.1e-08 60.8 77 48.1
TWI39G0419 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 8.0e-08 60.5 44 65.9
TWI14G0129 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 1.8e-07 59.3 44 65.9
AUR62031437 Chenopodium quinoa HOM05D002960 ORTHO05D003632 2.3e-07 58.9 35 74.3
Nitab4.5_0004686g0030 Nicotiana tabacum HOM05D002960 ORTHO05D003632 2.3e-07 58.9 46 58.7
Nitab4.5_0008581g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 2.3e-07 58.9 46 58.7
Peaxi162Scf00820g00510 Petunia axillaris HOM05D002960 ORTHO05D003632 2.3e-07 58.9 46 58.7
QL07p039962 Quercus lobata HOM05D002960 ORTHO05D003632 2.3e-07 58.9 45 62.2
vmacro07383 Vaccinium macrocarpon HOM05D002960 ORTHO05D003632 2.3e-07 58.9 48 62.5
Nitab4.5_0009950g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 3.0e-07 58.5 46 58.7
CAN.G824.20 Capsicum annuum HOM05D002960 ORTHO05D003632 4.0e-07 58.2 46 58.7
Eucgr.A00001 Eucalyptus grandis HOM05D002960 ORTHO05D003632 4.0e-07 58.2 40 67.5
Nitab4.5_0001331g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 4.0e-07 58.2 44 59.1
Lsat_1_v5_gn_9_56821 Lactuca sativa HOM05D002960 ORTHO05D003632 5.2e-07 57.8 28 85.7
Rhsim09G0201000 Rhododendron simsii HOM05D002960 ORTHO05D003632 5.2e-07 57.8 40 75.0
SHI09095 Sapria himalayana HOM05D002960 ORTHO05D003632 5.2e-07 57.8 92 40.2
HanXRQChr14g0433471 Helianthus annuus HOM05D002960 ORTHO05D003632 6.8e-07 57.4 45 62.2
Nitab4.5_0011344g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 6.8e-07 57.4 45 57.8
Solyc09g009180.3 Solanum lycopersicum HOM05D002960 ORTHO05D003632 6.8e-07 57.4 46 56.5
Sopen09g003910 Solanum pennellii HOM05D002960 ORTHO05D003632 6.8e-07 57.4 46 56.5
PGSC0003DMG400002680 Solanum tuberosum HOM05D002960 ORTHO05D003632 6.8e-07 57.4 46 56.5
arahy.Tifrunner.gnm1.ann1.0GK98G Arachis hypogaea HOM05D002960 ORTHO05D003632 8.9e-07 57.0 50 56.0
arahy.Tifrunner.gnm1.ann1.LVPM4A Arachis hypogaea HOM05D002960 ORTHO05D003632 8.9e-07 57.0 50 56.0
CAN.G2487.1 Capsicum annuum HOM05D002960 ORTHO05D003632 8.9e-07 57.0 43 62.8
Rhsim03G0078900 Rhododendron simsii HOM05D002960 ORTHO05D003632 8.9e-07 57.0 47 61.7
GSVIVG01028825001 Vitis vinifera HOM05D002960 ORTHO05D003632 8.9e-07 57.0 28 85.7
Migut.J00974 Erythranthe guttata HOM05D002960 ORTHO05D003632 1.2e-06 56.6 46 60.9
unitig_37.g11973 Utricularia gibba HOM05D002960 ORTHO05D003632 1.2e-06 56.6 34 70.6
Actinidia31843 Actinidia chinensis HOM05D002960 ORTHO05D003632 2.0e-06 55.8 40 70.0
CBR_g22342 Chara braunii HOM05D002960 ORTHO05D003632 2.6e-06 55.5 46 58.7
Hund04797 Selenicereus undatus HOM05D002960 ORTHO05D003632 3.4e-06 55.1 45 60.0
MSTRG.5818 Avicennia marina HOM05D002960 ORTHO05D003632 4.4e-06 54.7 45 57.8
ECA238G2360 Erigeron canadensis HOM05D002960 ORTHO05D003632 4.4e-06 54.7 66 56.1
Solyc03g007610.4 Solanum lycopersicum HOM05D002960 ORTHO05D003632 4.4e-06 54.7 44 59.1
AL7G32940 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 5.7e-06 54.3 45 62.2
Cfa019431 Carpinus fangiana HOM05D002960 ORTHO05D003632 5.7e-06 54.3 82 48.8
unitig_744.g24693 Utricularia gibba HOM05D002960 ORTHO05D003632 5.7e-06 54.3 46 54.3
AT4G21180 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 7.5e-06 53.9 45 62.2
CDE02G1775 Ceratophyllum demersum HOM05D002960 ORTHO05D003632 7.5e-06 53.9 46 58.7
Oeu034359.1 Olea europaea HOM05D002960 ORTHO05D003632 7.5e-06 53.9 76 46.1
Migut.F00279 Erythranthe guttata HOM05D002960 ORTHO05D003632 9.8e-06 53.5 28 78.6
SalBow3G4009 Salvia bowleyana HOM05D002960 ORTHO05D003632 9.8e-06 53.5 82 45.1


User provided reference genes

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