Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p37610 Brassica napus HOM05D003604 ORTHO05D004110 7.2e-91 337.4 194 100.0
A09p03180 Brassica napus HOM05D003604 ORTHO05D004110 3.2e-38 162.5 151 74.2
BcaC03g16006 Brassica carinata HOM05D003604 ORTHO05D004110 3.6e-34 149.1 122 86.9
A05p02960 Brassica napus HOM05D003604 ORTHO05D016132 6.8e-33 144.8 117 82.9
BraA07t29088Z Brassica rapa HOM05D003604 ORTHO05D016132 6.8e-33 144.8 117 82.9
BolC5t33544H Brassica oleracea HOM05D003604 ORTHO05D004110 3.4e-32 142.5 117 86.3
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 2.9e-31 139.4 170 49.4
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 1.1e-30 137.5 136 58.8
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 3.8e-23 112.5 127 48.0
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 6.4e-23 111.7 161 44.1
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 8.4e-23 111.3 161 44.1
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 8.4e-23 111.3 161 44.1
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 8.4e-23 111.3 161 44.1
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 8.4e-23 111.3 161 44.1
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 8.4e-23 111.3 161 44.1
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 1.1e-22 110.9 161 43.5
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 1.1e-22 110.9 161 43.5
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 1.4e-22 110.5 161 43.5
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 1.4e-22 110.5 161 43.5
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 42.2
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 44.1
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 44.1
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 44.1
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 44.1
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 2.4e-22 109.8 161 44.1
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 4.1e-22 109.0 161 42.9
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 7.1e-22 108.2 161 43.5
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 9.2e-22 107.8 161 43.5
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 2.7e-21 106.3 161 41.6
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 6.0e-21 105.1 161 41.6
Dinv22327 Davidia involucrata HOM05D003604 ORTHO05D004110 8.6e-20 101.3 167 38.9
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 2.5e-19 99.8 161 40.4
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 2.5e-19 99.8 164 39.6
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 5.6e-19 98.6 161 39.1
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 9.6e-19 97.8 161 39.1
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 9.6e-19 97.8 161 39.1
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 1.2e-18 97.4 161 38.5
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 1.6e-18 97.1 148 41.2
Prupe.4G197400 Prunus persica HOM05D003604 ORTHO05D004110 2.8e-18 96.3 161 38.5
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 3.6e-18 95.9 161 37.9
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 4.7e-18 95.5 161 37.9
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 6.2e-18 95.1 161 37.3
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 6.2e-18 95.1 119 46.2
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 6.2e-18 95.1 119 46.2
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 8.1e-18 94.7 161 39.1
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 8.1e-18 94.7 161 39.1
BolC4t23532H Brassica oleracea HOM05D010573 ORTHO05D016132 1.1e-17 94.4 89 88.8
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.1e-17 94.4 162 36.4
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 1.1e-17 94.4 161 39.1
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 1.1e-17 94.4 161 37.9
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 1.4e-17 94.0 161 36.0
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 1.4e-17 94.0 161 38.5
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.4e-17 94.0 161 38.5
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.4e-17 94.0 161 36.6
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 1.4e-17 94.0 161 38.5
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 1.4e-17 94.0 161 37.3
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 1.8e-17 93.6 161 37.3
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 1.8e-17 93.6 161 37.3
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 2.4e-17 93.2 161 37.3
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 2.4e-17 93.2 161 37.3
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 2.4e-17 93.2 161 36.6
TAR626G0206 Trochodendron aralioides HOM05D003604 ORTHO05D004110 2.4e-17 93.2 161 37.9
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 37.3
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.0
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.0
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.6
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.0
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.6
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 3.1e-17 92.8 161 36.6
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 4.0e-17 92.4 161 37.3
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 4.0e-17 92.4 161 37.3
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 37.3
CiPaw.11G180300 Carya illinoinensis HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 36.6
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 35.4
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 36.6
Gohir.D13G147400 Gossypium hirsutum HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 36.0
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 5.2e-17 92.0 161 36.0
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 6.9e-17 91.7 161 35.4
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 6.9e-17 91.7 161 36.0
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 6.9e-17 91.7 161 36.0
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 6.9e-17 91.7 161 37.3
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 8.9e-17 91.3 164 36.6
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 8.9e-17 91.3 161 36.6
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 8.9e-17 91.3 161 37.3
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 1.2e-16 90.9 161 36.6
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 1.2e-16 90.9 161 37.9
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 1.2e-16 90.9 161 36.6
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 1.5e-16 90.5 161 36.0
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.0e-16 90.1 162 35.2
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 2.0e-16 90.1 161 36.6
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 2.0e-16 90.1 161 35.4
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 2.0e-16 90.1 161 35.4
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 2.6e-16 89.7 161 35.4
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 2.6e-16 89.7 161 37.3
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 2.6e-16 89.7 161 35.4
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 3.4e-16 89.4 161 35.4
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 3.4e-16 89.4 161 35.4
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 3.4e-16 89.4 161 35.4
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 3.4e-16 89.4 179 34.1
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 4.4e-16 89.0 161 35.4
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 4.4e-16 89.0 161 36.0
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 4.4e-16 89.0 161 34.8
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 4.4e-16 89.0 161 35.4
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 4.4e-16 89.0 154 36.4
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 4.4e-16 89.0 161 35.4
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 7.6e-16 88.2 161 35.4
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 7.6e-16 88.2 161 35.4
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 7.6e-16 88.2 161 36.0
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 9.9e-16 87.8 161 35.4
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 9.9e-16 87.8 161 36.0
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 9.9e-16 87.8 161 36.0
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 1.3e-15 87.4 161 34.2
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 1.3e-15 87.4 161 37.3
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 1.3e-15 87.4 161 36.6
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 1.3e-15 87.4 161 36.0
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 1.3e-15 87.4 161 36.0
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.7e-15 87.0 161 35.4
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 1.7e-15 87.0 161 36.6
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.2e-15 86.7 154 35.7
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.2e-15 86.7 154 35.7
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 2.9e-15 86.3 157 35.7
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 2.9e-15 86.3 161 34.2
BolC5t33535H Brassica oleracea HOM05D010573 ORTHO05D016132 3.8e-15 85.9 86 87.2
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 3.8e-15 85.9 161 34.2
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 3.8e-15 85.9 161 34.2
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 6.4e-15 85.1 161 37.9
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 1.1e-14 84.3 161 34.8
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 1.4e-14 84.0 160 33.1
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 1.9e-14 83.6 161 37.3
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 2.4e-14 83.2 159 35.8
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 2.4e-14 83.2 170 34.1
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 2.4e-14 83.2 161 34.2
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 3.2e-14 82.8 144 38.2
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
FvH4_2g07550 Fragaria vesca HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 7.1e-14 81.6 154 35.7
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 7.1e-14 81.6 161 34.8
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 7.1e-14 81.6 160 33.8
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 9.3e-14 81.3 154 35.7
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 1.6e-13 80.5 161 32.9
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.6e-13 80.5 154 35.1
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.7e-13 79.7 154 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2832 Anthoceros agrestis HOM05D003604 ORTHO05D004110 4.6e-13 79.0 163 32.5
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.6e-12 75.1 126 37.3
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 8.7e-12 74.7 161 33.5
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 1.1e-11 74.3 164 30.5
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 1.3e-10 70.9 162 30.2
AagrBONN_evm.TU.Sc2ySwM_228.4281 Anthoceros agrestis HOM05D003604 ORTHO05D004110 1.6e-10 70.5 158 32.3
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 3.6e-10 69.3 152 31.6
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 3.6e-10 69.3 161 31.1
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 4.8e-10 68.9 167 31.7
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 6.2e-10 68.6 145 33.1
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 6.2e-10 68.6 145 33.1
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 6.2e-10 68.6 145 33.1
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.1e-09 67.8 145 33.1
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 1.3e-07 60.8 38 73.7
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.7e-07 60.5 38 76.3
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 1.7e-07 60.5 107 34.6
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 2.2e-07 60.1 107 34.6
FAN26G1617 Fragaria x ananassa HOM05D003604 ORTHO05D004110 8.4e-07 58.2 39 66.7
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.1e-06 57.8 104 33.7
PGSC0003DMG402014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 1.1e-06 57.8 84 36.9
BolC2t09158H Brassica oleracea HOM05D025504 ORTHO05D016132 1.9e-06 57.0 42 71.4
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 1.9e-06 57.0 104 35.6
PGSC0003DMG400023083 Solanum tuberosum HOM05D003604 ORTHO05D004110 1.9e-06 57.0 107 32.7
RcHm_v2.0_Chr6g0247051 Rosa chinensis HOM05D003604 ORTHO05D004110 3.2e-06 56.2 28 85.7
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 5.4e-06 55.5 38 68.4


User provided reference genes

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