Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 1.4e-116 422.9 208 100.0
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 7.2e-105 384.0 196 95.9
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 5.1e-95 351.3 204 87.3
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 1.3e-90 336.7 196 86.2
BolC6t37247H Brassica oleracea HOM05D003212 ORTHO05D017586 4.0e-79 298.5 150 97.3
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 3.2e-44 182.6 124 78.2
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 8.9e-31 137.9 71 91.5
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 4.3e-25 119.0 126 54.0
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 4.3e-25 119.0 126 54.0
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 4.3e-25 119.0 126 54.0
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 7.3e-25 118.2 126 53.2
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 9.6e-25 117.9 142 51.4
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 3.6e-24 115.9 142 50.7
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 3.6e-24 115.9 126 54.0
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 6.2e-24 115.2 126 53.2
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 6.2e-24 115.2 142 50.7
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 6.2e-24 115.2 126 53.2
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 1.1e-23 114.4 126 53.2
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 1.4e-23 114.0 126 52.4
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 4.0e-23 112.5 126 52.4
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 6.9e-23 111.7 126 53.2
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 6.9e-23 111.7 126 53.2
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 1.2e-22 110.9 126 52.4
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 1.2e-22 110.9 126 51.6
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 1.2e-22 110.9 126 52.4
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 1.2e-22 110.9 126 52.4
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 2.0e-22 110.2 169 47.3
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 3.4e-22 109.4 126 52.4
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 4.4e-22 109.0 126 51.6
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 4.4e-22 109.0 126 50.0
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 5.8e-22 108.6 126 51.6
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 9.9e-22 107.8 126 50.0
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 1.3e-21 107.5 126 50.8
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 2.2e-21 106.7 126 50.0
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 2.9e-21 106.3 137 49.6
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 2.9e-21 106.3 123 50.4
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 3.8e-21 105.9 124 50.0
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 3.8e-21 105.9 138 50.0
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 4.9e-21 105.5 126 48.4
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 6.4e-21 105.1 138 49.3
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 6.4e-21 105.1 126 50.0
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 1.4e-20 104.0 126 49.2
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 1.9e-20 103.6 126 49.2
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 1.9e-20 103.6 124 50.0
BcaC03g17911 Brassica carinata HOM05D003212 ORTHO05D017537 4.2e-20 102.4 50 96.0
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 4.2e-20 102.4 132 45.5
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 7.1e-20 101.7 126 48.4
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 9.3e-20 101.3 138 47.1
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 9.3e-20 101.3 138 47.1
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 9.3e-20 101.3 138 47.8
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 1.2e-19 100.9 125 47.2
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 1.6e-19 100.5 126 46.0
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 1.6e-19 100.5 126 48.4
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 2.7e-19 99.8 123 48.8
C02p23320 Brassica napus HOM05D002205 ORTHO05D018573 3.5e-19 99.4 128 48.4
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.5e-19 99.4 153 41.2
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.5e-19 99.4 153 41.2
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 3.5e-19 99.4 153 41.2
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 3.5e-19 99.4 126 47.6
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 3.5e-19 99.4 123 48.8
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 3.5e-19 99.4 126 46.0
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 4.6e-19 99.0 124 46.8
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 4.6e-19 99.0 123 49.6
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 6.0e-19 98.6 98 58.2
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 6.0e-19 98.6 98 58.2
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 6.0e-19 98.6 126 48.4
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 6.0e-19 98.6 126 46.0
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 7.8e-19 98.2 123 48.0
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 1.3e-18 97.4 123 47.2
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 1.3e-18 97.4 123 48.0
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 2.3e-18 96.7 123 46.3
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 2.3e-18 96.7 138 45.7
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 3.0e-18 96.3 138 47.1
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 5.1e-18 95.5 126 46.0
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 5.1e-18 95.5 134 45.5
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 8.7e-18 94.7 123 47.2
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 8.7e-18 94.7 126 46.8
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 8.7e-18 94.7 104 51.9
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 1.1e-17 94.4 126 44.4
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 1.1e-17 94.4 123 45.5
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 1.5e-17 94.0 126 43.7
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 1.9e-17 93.6 123 45.5
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 2.5e-17 93.2 144 45.1
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 4.3e-17 92.4 123 45.5
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 5.6e-17 92.0 127 42.5
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 5.6e-17 92.0 128 43.8
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 7.3e-17 91.7 104 49.0
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 9.6e-17 91.3 123 46.3
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 1.3e-16 90.9 126 43.7
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 1.6e-16 90.5 124 46.0
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 2.1e-16 90.1 126 42.9
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 2.8e-16 89.7 90 54.4
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 2.8e-16 89.7 126 42.9
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 2.8e-16 89.7 123 43.9
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 2.8e-16 89.7 123 44.7
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 3.6e-16 89.4 124 44.4
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 3.6e-16 89.4 124 44.4
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 3.6e-16 89.4 124 44.4
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.6e-16 89.4 126 43.7
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 4.8e-16 89.0 124 42.7
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 4.8e-16 89.0 126 44.4
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 4.8e-16 89.0 124 44.4
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 4.8e-16 89.0 126 43.7
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 4.8e-16 89.0 123 45.5
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 4.8e-16 89.0 123 44.7
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 6.2e-16 88.6 124 44.4
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 8.1e-16 88.2 124 43.5
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 8.1e-16 88.2 124 43.5
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 8.1e-16 88.2 126 42.9
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 8.1e-16 88.2 126 42.9
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 8.1e-16 88.2 147 41.5
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 8.1e-16 88.2 138 44.2
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 8.1e-16 88.2 124 43.5
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 1.1e-15 87.8 153 41.2
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 1.4e-15 87.4 90 52.2
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 1.8e-15 87.0 124 42.7
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 1.8e-15 87.0 124 44.4
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 2.4e-15 86.7 124 43.5
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 4.0e-15 85.9 104 48.1
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 4.0e-15 85.9 123 43.9
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 4.0e-15 85.9 152 38.8
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 4.0e-15 85.9 126 42.1
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 5.3e-15 85.5 104 47.1
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 5.3e-15 85.5 136 41.2
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 5.3e-15 85.5 104 48.1
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 5.3e-15 85.5 104 48.1
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 6.9e-15 85.1 124 42.7
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 6.9e-15 85.1 127 43.3
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 9.0e-15 84.7 124 42.7
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 9.0e-15 84.7 124 43.5
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 9.0e-15 84.7 104 48.1
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 9.0e-15 84.7 95 49.5
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.2e-14 84.3 124 44.4
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 1.5e-14 84.0 167 36.5
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 2.0e-14 83.6 126 40.5
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 2.0e-14 83.6 123 43.1
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 2.6e-14 83.2 126 41.3
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 2.6e-14 83.2 104 47.1
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 3.4e-14 82.8 123 41.5
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 4.5e-14 82.4 126 41.3
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 5.8e-14 82.0 124 42.7
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 5.8e-14 82.0 104 47.1
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 7.6e-14 81.6 104 45.2
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 9.9e-14 81.3 105 46.7
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 2.2e-13 80.1 126 42.1
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 3.8e-13 79.3 130 40.8
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 4.9e-13 79.0 138 38.4
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 1.4e-12 77.4 136 41.9
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 2.4e-12 76.6 123 40.7
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 5.4e-12 75.5 53 71.7
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 5.4e-12 75.5 97 44.3
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 1.6e-11 73.9 50 72.0
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 6.0e-11 72.0 90 45.6
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 6.0e-11 72.0 169 33.1
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 7.9e-11 71.6 76 51.3
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 7.9e-11 71.6 76 51.3
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 1.3e-10 70.9 113 42.5
BcaC05g27724 Brassica carinata HOM05D003212 ORTHO05D017537 1.8e-10 70.5 54 70.4
C05p37050 Brassica napus HOM05D003212 ORTHO05D017537 1.8e-10 70.5 54 70.4
C09p44450 Brassica napus HOM05D003212 ORTHO05D017537 1.8e-10 70.5 54 70.4
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 3.0e-10 69.7 114 42.1
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 3.0e-10 69.7 138 38.4
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 1.5e-09 67.4 128 32.8
Haze_05677 Corylus avellana HOM05D002205 ORTHO05D017586 1.3e-08 64.3 43 67.4
BolC8t52206H Brassica oleracea HOM05D003212 ORTHO05D017537 3.7e-08 62.8 171 32.7
HPP92_018655 Vanilla planifolia HOM05D002205 ORTHO05D004847 3.7e-08 62.8 138 37.0
BraA10t44669Z Brassica rapa HOM05D003212 ORTHO05D017537 6.2e-08 62.0 54 63.0
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 1.1e-07 61.2 59 50.8
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 4.5e-06 55.8 134 33.6


User provided reference genes

Program Settings