Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 1.4e-87 326.2 159 100.0
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 6.7e-87 323.9 159 99.4
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.1e-86 323.2 159 98.7
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 2.6e-86 322.0 159 98.1
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 9.7e-86 320.1 159 97.5
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 2.2e-85 318.9 159 97.5
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 2.2e-77 292.4 156 88.5
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 2.8e-77 292.0 155 87.7
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 1.1e-76 290.0 156 88.5
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.0e-75 285.8 156 87.8
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 2.6e-70 268.9 154 83.8
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 7.2e-65 250.8 156 73.7
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 2.3e-63 245.7 174 69.5
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 6.8e-63 244.2 155 73.5
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 2.0e-62 242.7 155 71.6
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 4.4e-62 241.5 152 72.4
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 7.5e-62 240.7 154 72.7
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 9.8e-62 240.4 158 69.6
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 9.8e-62 240.4 158 69.6
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 8.3e-61 237.3 153 73.2
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.8e-60 236.1 158 70.3
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 1.8e-60 236.1 158 71.5
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.1e-60 235.3 159 69.2
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 7.0e-60 234.2 152 73.0
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 7.0e-60 234.2 160 68.8
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 7.0e-60 234.2 158 72.2
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 7.0e-60 234.2 158 72.2
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 9.1e-60 233.8 154 73.4
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 2.0e-59 232.6 154 69.5
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.0e-59 232.6 157 68.8
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.7e-59 232.3 154 69.5
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.7e-59 232.3 154 72.1
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 7.7e-59 230.7 153 71.2
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 1.0e-58 230.3 165 67.3
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 2.3e-58 229.2 165 69.1
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 2.9e-58 228.8 159 66.7
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 3.8e-58 228.4 154 71.4
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.8e-58 228.4 159 67.3
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 8.6e-58 227.3 159 67.9
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 1.1e-57 226.9 156 71.8
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.1e-57 226.9 154 69.5
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.9e-57 226.1 155 71.0
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.9e-57 226.1 154 68.8
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 3.3e-57 225.3 160 67.5
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 3.3e-57 225.3 160 66.9
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 5.5e-57 224.6 154 68.8
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 7.2e-57 224.2 152 70.4
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 7.2e-57 224.2 159 67.9
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 9.5e-57 223.8 153 68.6
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.2e-56 223.4 153 68.0
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.2e-56 223.4 157 67.5
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 1.2e-56 223.4 152 67.1
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 2.8e-56 222.2 157 69.4
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 2.8e-56 222.2 157 69.4
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 2.8e-56 222.2 157 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 3.6e-56 221.9 151 68.2
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 3.6e-56 221.9 157 66.9
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 8.0e-56 220.7 157 66.9
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 1.0e-55 220.3 157 65.6
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 1.0e-55 220.3 155 70.3
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 1.4e-55 219.9 157 65.6
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 4.0e-55 218.4 154 66.9
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 6.8e-55 217.6 154 65.6
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 2.0e-54 216.1 187 56.7
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.4e-54 214.9 158 65.2
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 1.7e-53 213.0 164 65.2
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.2e-53 212.6 153 64.7
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.9e-53 212.2 158 64.6
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 8.3e-53 210.7 153 65.4
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 1.1e-52 210.3 153 66.0
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.4e-52 209.1 153 64.7
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 2.4e-52 209.1 152 67.8
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 3.2e-52 208.8 159 64.8
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.2e-52 208.8 155 64.5
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.2e-52 208.8 155 64.5
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 4.1e-52 208.4 153 64.7
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 5.4e-52 208.0 194 55.7
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 5.4e-52 208.0 153 64.7
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 9.2e-52 207.2 159 63.5
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 2.7e-51 205.7 156 62.8
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 3.5e-51 205.3 151 63.6
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 5.9e-51 204.5 158 62.0
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 6.6e-50 201.1 150 62.0
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 6.6e-50 201.1 153 62.1
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 3.3e-49 198.7 159 63.5
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 2.3e-47 192.6 221 48.0
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 4.4e-46 188.3 133 66.9
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.3e-45 186.8 150 60.7
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 6.0e-43 177.9 115 67.8
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 6.0e-43 177.9 124 67.7
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 7.8e-43 177.6 116 71.6
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 7.8e-43 177.6 115 71.3
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 5.6e-41 171.4 114 69.3
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.8e-40 169.1 157 55.4
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 6.4e-37 157.9 110 69.1
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.4e-36 156.8 153 55.6
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.7e-35 152.5 108 66.7
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 6.0e-35 151.4 90 78.9
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 9.5e-33 144.1 90 72.2
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 5.2e-31 138.3 154 48.1
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 5.8e-22 108.2 72 68.1
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.6e-18 94.7 95 54.7
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 1.2e-11 73.9 61 59.0
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.3e-10 69.7 81 50.6
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 5.1e-10 68.6 45 64.4
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 9.6e-09 64.3 53 56.6


User provided reference genes

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