Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 5.4e-259 897.1 449 100.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.0e-254 880.9 449 98.2
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-247 859.4 449 95.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.5e-242 841.3 449 94.7
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.9e-228 795.0 452 90.0
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 5.5e-227 790.8 455 90.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 5.5e-227 790.8 455 90.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 6.1e-226 787.3 454 89.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 6.7e-225 783.9 457 89.5
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.5e-224 782.7 451 89.6
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.4e-222 775.4 454 88.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 5.3e-222 774.2 454 87.9
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.5e-221 772.7 457 89.1
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 7.7e-221 770.4 454 87.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-220 769.6 454 87.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 7.2e-219 763.8 454 87.2
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 7.2e-219 763.8 450 87.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-218 762.3 454 87.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 5.7e-216 754.2 452 85.4
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.8e-212 741.5 454 84.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.7e-202 708.8 453 82.8
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 3.7e-191 671.8 455 77.6
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 9.1e-190 667.2 337 98.2
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 9.1e-190 667.2 451 77.6
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.3e-185 652.5 450 75.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.4e-182 642.5 452 74.8
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.8e-180 635.2 450 73.8
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 8.0e-178 627.5 452 73.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.8e-177 626.3 462 71.9
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 6.8e-177 624.4 453 71.7
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.2e-176 623.6 453 71.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.0e-176 622.9 454 71.8
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.6e-176 622.5 454 72.2
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.2e-175 619.4 455 70.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.4e-174 616.7 452 72.6
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.4e-174 615.9 452 73.5
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 4.6e-173 611.7 453 70.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 6.0e-173 611.3 461 70.7
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.0e-172 610.5 451 71.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.0e-172 610.5 451 71.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 3.0e-172 609.0 454 71.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.5e-171 605.9 453 71.3
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.6e-170 603.2 453 70.2
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 8.0e-170 600.9 454 69.4
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.8e-169 599.7 451 69.6
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.3e-169 599.4 466 68.0
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.5e-168 596.7 454 68.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 4.4e-168 595.1 454 68.5
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.8e-168 594.0 454 68.9
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.7e-167 593.2 459 68.2
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.2e-167 592.8 452 68.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 6.4e-167 591.3 453 68.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.4e-166 590.1 453 68.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.4e-166 588.2 444 70.0
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 5.4e-166 588.2 454 69.2
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.0e-166 587.8 454 68.5
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 9.2e-166 587.4 453 68.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.1e-165 586.3 472 67.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.6e-165 585.1 452 68.1
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 4.6e-165 585.1 454 68.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.0e-164 583.9 453 67.8
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.6e-164 580.9 453 67.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.5e-163 580.1 451 67.4
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.5e-163 580.1 454 67.4
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.9e-163 579.7 453 67.8
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.5e-163 579.3 453 66.7
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 7.3e-163 577.8 453 67.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.2e-162 577.0 452 67.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-162 577.0 448 67.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.6e-162 575.5 454 66.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 4.7e-162 575.1 463 67.6
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 8.1e-162 574.3 473 66.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.4e-161 573.5 451 65.6
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 6.8e-161 571.2 452 67.7
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.0e-160 569.7 457 65.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.0e-160 569.7 487 62.8
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 4.4e-160 568.5 463 66.5
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 4.4e-160 568.5 452 67.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.9e-159 565.8 454 66.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 2.9e-159 565.8 449 67.0
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-159 565.1 453 65.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 8.3e-159 564.3 454 67.0
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 8.3e-159 564.3 469 65.2
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 7.1e-158 561.2 435 68.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 9.2e-158 560.8 456 66.7
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.7e-157 559.3 453 66.2
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 3.5e-157 558.9 456 66.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.5e-157 558.9 451 67.6
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.0e-156 557.4 453 66.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.3e-156 557.0 454 65.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.0e-156 555.8 449 65.7
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.1e-155 553.9 449 66.1
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.1e-155 553.9 453 65.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-155 553.5 533 57.4
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.9e-155 553.1 453 64.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 3.3e-155 552.4 449 65.3
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 9.5e-155 550.8 452 65.0
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-154 550.4 449 65.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.6e-154 550.1 455 65.5
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 8.1e-154 547.7 487 61.8
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.4e-153 547.0 454 65.2
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.1e-153 545.8 436 66.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.8e-153 544.7 442 66.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-150 537.0 450 64.2
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.2e-150 535.8 450 64.2
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 4.2e-150 535.4 456 62.5
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 2.1e-149 533.1 456 63.2
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 7.8e-149 531.2 457 63.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.0e-148 530.8 449 63.7
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 8.7e-148 527.7 425 67.1
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.6e-147 525.0 452 63.1
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.1e-146 523.1 452 62.8
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.1e-145 519.2 452 63.3
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.6e-144 516.2 415 65.5
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 5.8e-144 515.0 451 61.9
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-142 510.4 521 54.7
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.1e-141 506.5 443 63.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 8.7e-140 501.1 442 60.4
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.6e-138 495.7 465 58.5
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.4e-137 493.0 433 63.5
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 7.6e-136 488.0 405 64.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.4e-135 484.6 446 58.1
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.2e-134 482.6 454 58.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.0e-132 477.6 438 61.6
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 8.7e-132 474.6 435 59.8
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.1e-130 469.9 420 60.2
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 3.4e-128 462.6 460 58.0
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.3e-124 450.7 415 61.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 6.9e-121 438.3 293 75.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.7e-116 421.8 437 54.5
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 5.7e-115 418.7 507 52.3
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.2e-114 416.8 387 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.7e-106 390.6 449 49.4
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.1e-105 387.9 316 65.5
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.1e-105 387.9 463 49.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 5.0e-103 379.0 449 48.6
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-101 372.9 254 73.6
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.7e-95 354.0 447 46.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.7e-90 336.3 197 87.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-87 327.0 325 57.5
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.2e-85 321.2 306 59.5
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 2.0e-80 303.9 197 77.2
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.5e-75 287.7 439 40.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.7e-72 275.4 217 64.5
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.3e-71 274.6 347 46.4
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.0e-67 260.8 197 67.5
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.1e-65 253.1 284 53.5
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 7.0e-65 252.3 524 36.5
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.5e-62 241.9 151 80.8
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.0e-60 238.4 201 61.7
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 4.0e-60 236.5 119 98.3
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.9e-54 217.6 235 55.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.3e-54 216.9 187 64.2
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 5.8e-51 206.1 255 50.2
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.9e-47 193.4 270 44.1
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.7e-45 186.4 175 54.9
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.1e-44 185.3 133 72.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.2e-44 183.0 219 48.4
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.3e-42 178.3 140 65.7
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.7e-40 170.6 328 35.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.2e-35 155.2 426 28.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 7.6e-35 152.5 343 32.4
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.6e-32 144.8 160 51.9
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.4e-27 127.1 79 83.5
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.8e-27 126.3 165 43.6
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.2e-26 124.4 76 86.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 6.4e-26 122.9 87 66.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.2e-24 118.6 76 71.1
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 3.3e-22 110.5 114 57.0
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.3e-18 98.6 114 52.6
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.7e-16 90.9 157 45.2
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 5.1e-15 86.7 128 46.1
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 8.7e-15 85.9 110 46.4
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.6e-13 81.6 55 76.4
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 4.5e-11 73.6 51 72.5
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 8.4e-10 69.3 53 71.7
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 7.1e-09 66.2 76 51.3
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-08 65.5 58 62.1
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-08 65.5 63 50.8
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.1e-06 58.9 36 72.2
SHI53352 Sapria himalayana HOM05D003886 ORTHO05D004587 9.6e-06 55.8 38 71.1


User provided reference genes

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