Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 5.8e-261 903.7 447 100.0
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.0e-257 892.9 447 98.7
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 3.1e-238 828.2 450 92.9
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.6e-237 825.1 451 92.2
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.1e-222 776.5 447 89.0
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 1.4e-201 706.4 450 80.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.1e-187 660.2 484 71.9
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 9.4e-187 657.1 480 73.5
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.0e-169 600.5 468 67.3
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 9.8e-168 594.0 457 68.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 7.8e-165 584.3 480 65.0
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.3e-164 582.8 472 65.7
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 4.6e-141 505.4 474 57.2
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 8.0e-69 265.4 310 51.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.2e-58 230.7 513 34.7
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.1e-57 228.4 517 35.8
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 9.5e-54 215.3 507 33.3
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.8e-51 205.3 517 33.5
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.3e-50 204.9 527 32.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 3.2e-49 200.3 585 29.1
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 6.6e-47 192.6 548 30.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.4e-44 184.9 537 31.3
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 3.1e-44 183.7 569 30.1
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.3e-42 178.3 370 33.0
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.9e-42 177.2 551 29.2
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.9e-42 176.4 599 28.7
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 4.9e-42 176.4 599 28.7
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.9e-41 174.5 482 29.7
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 4.1e-41 173.3 536 30.6
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 9.2e-41 172.2 526 29.5
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.7e-40 170.6 601 28.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 6.6e-39 166.0 441 29.5
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.3e-38 163.7 409 31.8
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 1.2e-37 161.8 425 32.5
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.8e-37 160.6 552 28.4
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 3.6e-37 160.2 406 31.5
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.1e-36 157.1 340 32.6
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.2e-35 155.2 538 29.0
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 7.5e-35 152.5 465 29.2
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.3e-34 151.8 258 38.4
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 8.3e-34 149.1 240 41.7
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.1e-33 148.7 402 29.6
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 9.2e-33 145.6 309 35.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-32 145.2 260 36.5
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.0e-31 142.1 618 25.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.3e-31 141.0 250 38.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 5.1e-31 139.8 281 34.9
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 6.6e-31 139.4 327 34.3
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.1e-30 138.7 338 35.5
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.3e-30 137.1 363 31.7
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 9.5e-30 135.6 250 38.0
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.2e-29 135.2 375 31.5
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.6e-29 133.7 415 30.4
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 4.7e-29 133.3 257 36.6
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.2e-29 132.9 245 37.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.4e-28 131.7 246 38.2
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.8e-28 131.3 249 36.9
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.1e-28 130.6 248 36.7
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.1e-28 130.6 255 38.0
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 5.2e-28 129.8 278 34.9
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.0e-27 127.9 261 35.2
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.4e-27 127.1 335 31.6
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 5.8e-27 126.3 241 36.9
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.7e-26 124.8 184 45.7
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.7e-26 124.8 336 32.1
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 6.4e-26 122.9 235 39.1
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.9e-25 121.3 382 30.6
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.9e-25 121.3 328 31.4
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 2.4e-25 120.9 236 33.9
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 3.2e-25 120.6 364 30.5
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.2e-25 120.6 235 34.0
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.1e-25 120.2 337 30.9
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 5.4e-25 119.8 276 34.4
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.6e-24 118.2 399 28.1
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.5e-24 117.1 269 34.2
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.9e-23 113.6 228 36.4
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 8.6e-23 112.5 280 32.9
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.5e-22 110.9 252 33.7
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 5.6e-22 109.8 242 34.3
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 7.3e-22 109.4 267 33.7
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.6e-21 108.2 198 34.8
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 2.1e-21 107.8 247 29.6
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 3.6e-21 107.1 226 35.0
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.7e-21 106.7 346 28.6
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 8.1e-21 105.9 344 30.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.8e-20 104.8 298 26.8
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 2.4e-20 104.4 244 32.4
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 5.2e-20 103.2 264 30.7
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 2.6e-19 100.9 172 39.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.4e-19 100.5 297 28.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.2e-18 97.8 173 35.3
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.8e-18 97.1 188 38.3
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 4.9e-18 96.7 174 38.5
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.4e-18 96.3 258 29.5
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 8.4e-18 95.9 162 34.6
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.2e-17 94.0 271 29.5
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 4.2e-17 93.6 182 35.2
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.2e-16 92.0 330 28.5
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.7e-16 90.9 210 31.0
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.5e-16 90.5 210 31.4
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.3e-15 87.8 88 46.6
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.3e-15 87.8 191 34.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.0e-15 87.4 279 28.7
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.9e-15 87.0 224 29.0
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.9e-15 87.0 224 29.9
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.9e-15 87.0 181 34.3
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 6.6e-15 86.3 181 34.3
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.3e-13 82.0 167 35.3
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 3.6e-13 80.5 99 46.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 8.1e-13 79.3 180 32.2
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.2e-11 75.5 349 24.9
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.4e-11 73.9 184 34.2
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.9e-11 72.4 82 41.5
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 6.4e-10 69.7 59 57.6
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.9e-09 68.2 186 29.0
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.2e-09 67.4 81 39.5
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 3.2e-09 67.4 167 30.5
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 4.6e-08 63.5 273 24.9
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 6.0e-08 63.2 178 29.2
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.3e-07 61.2 130 29.2
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 8.7e-07 59.3 77 44.2
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 2.5e-06 57.8 230 27.0
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 4.3e-06 57.0 126 34.1
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 4.3e-06 57.0 74 40.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 7.3e-06 56.2 91 40.7


User provided reference genes

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