Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 3.3e-65 251.5 123 100.0
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 7.6e-46 187.2 209 51.7
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.4e-44 182.2 103 83.5
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 2.4e-31 139.0 317 32.5
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.1e-28 130.2 101 67.3
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.4e-28 129.8 101 66.3
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.9e-28 129.4 304 30.9
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 2.5e-28 129.0 65 98.5
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.5e-28 129.0 297 31.3
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 3.2e-28 128.6 308 30.8
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.2e-28 128.6 283 32.2
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.2e-28 128.6 65 96.9
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 4.2e-28 128.3 101 65.3
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 5.5e-28 127.9 101 63.4
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 7.1e-28 127.5 303 31.0
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 9.3e-28 127.1 305 30.8
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 9.3e-28 127.1 303 30.7
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.1e-27 125.9 65 96.9
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 3.5e-27 125.2 295 30.5
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 4.6e-27 124.8 297 30.6
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 4.6e-27 124.8 303 30.7
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 6.0e-27 124.4 297 30.3
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 6.0e-27 124.4 301 30.9
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 7.9e-27 124.0 65 89.2
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.8e-26 122.9 308 29.2
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 3.0e-26 122.1 309 29.4
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 3.0e-26 122.1 304 29.9
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 3.0e-26 122.1 309 29.1
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 6.7e-26 120.9 101 59.4
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.7e-25 117.9 304 28.9
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.6e-24 116.3 101 58.4
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.2e-24 115.9 65 86.2
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.2e-24 115.9 65 86.2
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 2.2e-24 115.9 101 60.4
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 2.8e-24 115.5 101 59.4
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.8e-24 114.8 101 55.4
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 6.3e-24 114.4 101 57.4
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 6.3e-24 114.4 65 81.5
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 6.3e-24 114.4 101 58.4
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 6.3e-24 114.4 101 56.4
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 8.2e-24 114.0 65 81.5
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 8.2e-24 114.0 65 81.5
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 8.2e-24 114.0 65 81.5
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 8.2e-24 114.0 101 53.5
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 8.2e-24 114.0 65 83.1
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 8.2e-24 114.0 65 83.1
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 8.2e-24 114.0 101 58.4
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 1.1e-23 113.6 101 57.4
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.1e-23 113.6 101 57.4
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.1e-23 113.6 101 57.4
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.1e-23 113.6 327 27.8
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.1e-23 113.6 101 55.4
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.4e-23 113.2 65 81.5
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.4e-23 113.2 101 55.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.4e-23 113.2 65 81.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.8e-23 112.8 101 56.4
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.8e-23 112.8 101 56.4
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.8e-23 112.8 65 83.1
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.8e-23 112.8 65 80.0
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.8e-23 112.8 101 58.4
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.8e-23 112.8 101 57.4
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.8e-23 112.8 101 55.4
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.8e-23 112.8 65 78.5
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 2.4e-23 112.5 65 78.5
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 2.4e-23 112.5 101 55.4
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 2.4e-23 112.5 65 76.9
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 2.4e-23 112.5 65 76.9
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.4e-23 112.5 101 53.5
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 4.1e-23 111.7 65 78.5
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 4.1e-23 111.7 101 55.4
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 4.1e-23 111.7 65 81.5
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.3e-23 111.3 101 56.4
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.3e-23 111.3 65 78.5
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 5.3e-23 111.3 65 81.5
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 5.3e-23 111.3 65 81.5
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 6.9e-23 110.9 101 54.5
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.9e-23 110.9 101 54.5
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.9e-23 110.9 101 54.5
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 9.0e-23 110.5 65 80.0
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 9.0e-23 110.5 101 56.4
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 9.0e-23 110.5 101 55.4
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.2e-22 110.2 101 53.5
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-22 110.2 65 76.9
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-22 110.2 65 76.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.2e-22 110.2 65 80.0
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 1.2e-22 110.2 65 80.0
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-22 110.2 101 53.5
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.5e-22 109.8 99 52.5
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.5e-22 109.8 101 53.5
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.5e-22 109.8 101 55.4
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.0e-22 109.4 101 54.5
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.0e-22 109.4 101 54.5
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.6e-22 109.0 101 54.5
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.6e-22 109.0 65 80.0
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.6e-22 109.0 101 54.5
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.6e-22 109.0 101 54.5
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 3.4e-22 108.6 101 52.5
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 4.5e-22 108.2 65 76.9
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 5.9e-22 107.8 101 53.5
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 7.6e-22 107.5 65 75.4
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 7.6e-22 107.5 101 52.5
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.0e-21 107.1 65 78.5
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.3e-21 106.7 65 73.8
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.3e-21 106.7 65 73.8
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 1.3e-21 106.7 305 27.2
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 2.9e-21 105.5 65 72.3
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.9e-21 105.5 101 53.5
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.8e-21 105.1 101 52.5
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.8e-21 105.1 65 76.9
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 5.0e-21 104.8 306 27.1
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 5.0e-21 104.8 306 27.1
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 5.0e-21 104.8 57 80.7
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 6.5e-21 104.4 62 79.0
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 8.5e-21 104.0 94 56.4
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.1e-20 103.6 65 75.4
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.1e-20 103.6 101 53.5
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.1e-20 103.6 101 53.5
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.1e-20 103.6 65 75.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.4e-20 103.2 65 73.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 5.5e-20 101.3 116 44.8
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 9.3e-20 100.5 53 84.9
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.2e-19 100.1 96 60.4
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-19 100.1 88 60.2
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.2e-19 100.1 65 75.4
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 6.1e-19 97.8 71 60.6
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 6.1e-19 97.8 57 71.9
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 7.9e-19 97.4 54 75.9
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.9e-19 97.4 103 50.5
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.8e-18 96.3 54 75.9
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 5.1e-18 94.7 74 56.8
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.5e-17 92.4 57 68.4
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 3.3e-17 92.0 53 73.6
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.3e-17 92.0 70 60.0
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 3.3e-17 92.0 63 65.1
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.7e-16 88.6 100 46.0
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 1.1e-15 87.0 65 61.5
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.4e-15 86.7 56 66.1
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-14 83.6 53 66.0
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.2e-14 83.6 52 69.2
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 3.4e-14 82.0 51 72.5
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.9e-14 81.3 44 79.5
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.3e-13 80.1 42 83.3
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.5e-13 77.4 47 70.2
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.1e-12 77.0 39 84.6
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 2.5e-12 75.9 51 60.8
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 7.2e-12 74.3 49 67.3
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.2e-11 73.6 51 58.8
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.2e-11 73.6 43 69.8
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.7e-11 71.6 44 70.5
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 3.0e-10 68.9 44 68.2
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 1.4e-07 60.1 61 52.5
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 5.3e-07 58.2 42 64.3
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.0e-07 57.8 38 68.4


User provided reference genes

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