Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 4.5e-167 591.3 318 100.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.0e-166 590.1 318 99.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.9e-166 588.6 318 99.4
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-164 581.6 318 98.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 4.0e-163 578.2 318 98.1
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.3e-153 546.6 318 91.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.0e-150 537.0 318 90.6
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 3.8e-150 535.0 318 90.9
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 4.2e-149 531.6 318 89.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 6.1e-148 527.7 318 89.0
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.4e-147 526.6 315 88.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 8.9e-147 523.9 318 88.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 8.9e-147 523.9 318 88.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.6e-146 522.3 318 88.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 4.4e-146 521.5 318 88.4
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 8.3e-145 517.3 318 88.4
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.8e-142 508.4 291 93.5
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.0e-134 482.3 318 82.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-123 447.2 321 76.6
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.6e-118 427.6 307 77.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.8e-97 359.0 313 61.0
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.1e-96 357.5 307 59.9
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.4e-96 357.1 306 64.4
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.4e-96 356.3 307 58.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.4e-96 356.3 308 60.4
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 7.1e-96 354.8 307 59.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 9.3e-96 354.4 309 59.2
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-95 354.0 306 61.4
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.7e-95 352.8 310 60.0
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 6.0e-95 351.7 307 60.3
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.3e-94 350.5 309 59.9
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.3e-94 350.5 307 59.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 2.3e-94 349.7 307 60.3
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.3e-94 349.7 307 59.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.3e-94 349.7 307 59.0
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 6.7e-94 348.2 307 58.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 6.7e-94 348.2 317 65.0
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.9e-93 346.7 304 59.2
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.5e-93 346.3 306 66.0
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.3e-93 345.5 307 58.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 7.4e-93 344.7 312 58.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.6e-92 343.6 307 57.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.6e-92 343.6 310 58.7
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.1e-92 343.2 307 58.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.1e-92 343.2 306 57.5
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.8e-92 342.8 309 57.9
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 4.8e-92 342.0 309 57.3
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 4.8e-92 342.0 306 57.5
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 4.8e-92 342.0 315 57.1
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.2e-92 341.7 315 57.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 3.1e-91 339.3 308 56.8
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.1e-91 339.3 310 58.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.0e-91 339.0 307 56.0
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.0e-91 339.0 305 58.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.2e-90 337.4 313 56.9
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.5e-90 337.0 307 59.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.5e-90 337.0 313 55.9
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.6e-90 336.3 307 56.0
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.6e-90 336.3 306 56.9
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 2.6e-90 336.3 306 56.2
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.5e-90 335.5 307 55.0
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.2e-89 333.2 307 56.4
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.2e-89 333.2 309 55.7
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.9e-89 332.0 287 64.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 4.9e-89 332.0 309 56.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 6.4e-89 331.6 313 55.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.4e-88 330.5 313 58.5
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.9e-88 330.1 321 55.5
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.2e-88 329.3 309 55.7
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 7.1e-88 328.2 307 57.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 9.3e-88 327.8 309 55.3
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.1e-87 326.6 307 57.0
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.1e-87 326.6 302 56.6
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.7e-87 326.2 307 54.1
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.5e-87 325.9 307 57.0
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.8e-86 323.6 315 56.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.0e-86 322.8 363 49.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.6e-85 318.5 312 53.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 5.6e-85 318.5 310 55.8
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.3e-84 317.4 313 53.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.3e-84 317.4 313 53.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.1e-84 316.6 268 60.4
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.8e-84 316.2 307 55.0
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.7e-84 315.8 308 53.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.4e-83 313.2 314 51.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.4e-83 313.2 277 56.0
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.4e-83 313.2 278 57.2
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.1e-83 312.8 308 52.6
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 4.0e-83 312.4 276 56.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 5.3e-83 312.0 330 53.3
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-82 310.8 315 53.7
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.7e-81 307.0 276 57.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.9e-81 306.2 276 56.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.8e-81 305.8 319 49.5
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 6.5e-81 305.1 303 53.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.9e-80 303.5 330 51.2
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.2e-80 302.4 276 54.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.2e-79 300.8 305 51.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.6e-79 300.4 276 61.6
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.7e-79 299.7 330 51.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 6.0e-79 298.5 278 54.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 6.0e-79 298.5 306 52.9
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 6.7e-78 295.0 276 58.3
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.5e-77 293.9 321 48.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 7.4e-77 291.6 277 52.7
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 6.3e-76 288.5 241 62.7
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 5.3e-75 285.4 247 66.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.3e-75 285.4 307 51.1
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 5.9e-74 282.0 317 50.2
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 7.7e-74 281.6 290 53.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 7.9e-71 271.6 234 59.8
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.2e-68 263.5 247 53.4
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.4e-67 260.8 285 51.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.2e-66 257.7 267 50.9
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.0e-66 256.9 258 51.9
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 4.4e-61 239.2 317 41.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 4.4e-61 239.2 217 59.9
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.1e-59 234.6 282 45.0
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.5e-58 230.7 316 43.4
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.3e-57 227.6 279 43.0
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.1e-55 220.3 216 56.0
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.4e-53 211.8 191 56.0
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.0e-45 187.2 166 57.8
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.0e-45 187.2 197 51.3
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.8e-44 183.3 137 65.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.5e-37 161.0 109 64.2
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.7e-36 157.5 284 37.0
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-29 134.8 195 47.2
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 9.5e-24 115.2 98 62.2
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.2e-23 114.8 116 50.9


User provided reference genes

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