Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 3.8e-54 214.5 105 100.0
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 8.4e-54 213.4 105 99.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-53 212.2 105 98.1
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-53 212.2 105 98.1
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 1.5e-50 202.6 100 99.0
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 6.3e-41 170.6 109 84.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.1e-37 159.8 111 75.7
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.1e-37 159.8 110 77.3
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 9.4e-37 156.8 108 75.9
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-36 156.4 108 75.9
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.2e-36 156.4 110 76.4
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-36 155.6 108 76.9
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-36 155.6 108 75.9
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 7.9e-36 153.7 107 74.8
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.4e-35 152.9 112 74.1
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 5.1e-35 151.0 108 75.0
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-35 151.0 108 75.0
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 5.1e-35 151.0 108 75.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.5e-34 149.4 108 75.0
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.5e-34 149.4 108 75.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 2.0e-34 149.1 108 74.1
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 6.3e-33 144.1 104 74.0
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 7.5e-26 120.6 120 60.0
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 8.2e-25 117.1 108 61.1
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 5.3e-24 114.4 103 64.1
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 5.3e-24 114.4 103 64.1
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 7.0e-24 114.0 103 61.2
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 7.0e-24 114.0 103 63.1
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 7.0e-24 114.0 103 61.2
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 7.0e-24 114.0 103 63.1
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 9.1e-24 113.6 103 63.1
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-23 113.2 103 60.2
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.6e-23 112.8 103 63.1
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 3.5e-23 111.7 77 75.3
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.5e-23 111.7 103 60.2
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.5e-23 111.3 107 58.9
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.5e-22 107.1 102 58.8
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.5e-22 107.1 102 57.8
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 8.5e-22 107.1 102 57.8
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.5e-21 106.3 103 56.3
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 2.5e-21 105.5 97 63.9
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.2e-20 103.2 108 54.6
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.6e-20 102.8 113 61.1
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.7e-20 101.3 105 54.3
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 8.0e-20 100.5 103 57.3
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 4.0e-19 98.2 96 57.3
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.6e-12 76.3 104 42.3
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.7e-12 75.5 102 44.1
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.1e-12 74.3 99 43.4
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.8e-11 72.8 99 41.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 39.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 3.0e-11 72.0 101 47.5
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 5.2e-11 71.2 99 44.4
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 5.2e-11 71.2 90 46.7
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.2e-11 71.2 101 38.6
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.2e-10 70.1 107 43.0
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.5e-10 69.7 106 45.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.5e-10 69.7 105 40.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 7.5e-10 67.4 99 44.4
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 9.8e-10 67.0 105 41.9
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 9.8e-10 67.0 112 42.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.3e-09 66.6 112 36.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.7e-09 66.2 92 45.7
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-09 65.9 95 45.3
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.2e-09 65.9 109 40.4
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.8e-09 65.5 129 38.0
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 2.8e-09 65.5 95 45.3
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 2.8e-09 65.5 104 42.3
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.7e-09 65.1 129 38.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 3.7e-09 65.1 104 40.4
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.9e-09 64.7 95 41.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 4.9e-09 64.7 100 42.0
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.9e-09 64.7 102 43.1
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.9e-09 64.7 107 39.3
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.9e-09 64.7 107 39.3
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.3e-09 64.3 100 42.0
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.3e-09 64.3 105 40.0
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.3e-09 64.3 129 38.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 8.3e-09 63.9 93 41.9
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 108 38.0
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 104 39.4
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 109 37.6
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.1e-08 63.5 104 39.4
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.4e-08 63.2 112 40.2
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.4e-08 63.2 123 38.2
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.4e-08 63.2 111 38.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.4e-08 63.2 106 40.6
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.8e-08 62.8 93 40.9
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 2.4e-08 62.4 93 36.6
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.4e-08 62.4 95 43.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.1e-08 61.6 120 35.8
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 5.4e-08 61.2 137 34.3
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 9.2e-08 60.5 129 37.2
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.2e-07 60.1 96 41.7
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.6e-07 59.7 102 39.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.6e-07 59.7 107 38.3
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.6e-07 59.7 38 68.4
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.0e-07 59.3 113 40.7
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.7e-07 58.9 93 36.6
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.5e-07 58.5 115 33.0
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 5.9e-07 57.8 53 58.5
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.9e-07 57.8 113 39.8
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.9e-07 57.8 113 39.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.9e-07 57.8 101 35.6
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 5.9e-07 57.8 116 37.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 7.7e-07 57.4 136 33.1
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 7.7e-07 57.4 106 37.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 7.7e-07 57.4 99 36.4
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.0e-06 57.0 98 37.8
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 1.0e-06 57.0 94 37.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.3e-06 56.6 52 57.7
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.3e-06 56.6 101 38.6
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.3e-06 56.6 48 56.2
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.3e-06 56.6 101 38.6
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.3e-06 56.6 113 33.6
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.7e-06 56.2 89 38.2
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.7e-06 56.2 103 35.9
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 2.3e-06 55.8 42 69.0
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.3e-06 55.8 111 36.9
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.9e-06 55.5 102 41.2
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.9e-06 55.5 32 81.2
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 2.9e-06 55.5 43 65.1
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 3.8e-06 55.1 42 69.0
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 5.0e-06 54.7 89 37.1
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 5.0e-06 54.7 43 65.1
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 5.0e-06 54.7 36 69.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 5.0e-06 54.7 99 36.4
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 6.6e-06 54.3 104 38.5
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 6.6e-06 54.3 95 35.8
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 6.6e-06 54.3 55 52.7
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 6.6e-06 54.3 88 42.0
Hma1.2p1_0325F.1_g125970 Hydrangea macrophylla HOM05D004022 ORTHO05D004090 8.6e-06 53.9 33 78.8
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 8.6e-06 53.9 101 35.6


User provided reference genes

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