Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 2.3e-141 506.5 500 100.0
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 8.0e-102 375.2 459 80.4
BolC2t09504H Brassica oleracea HOM05D005307 ORTHO05D027550 2.9e-51 207.2 333 93.4
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 1.1e-47 195.3 160 74.4
BcaC03g15750 Brassica carinata HOM05D005307 ORTHO05D027550 8.1e-46 189.1 333 79.9
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.7e-41 174.1 148 73.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 3.2e-34 150.6 379 41.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.9e-28 129.8 402 38.1
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.9e-28 129.8 402 38.1
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 5.9e-28 129.8 340 40.6
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.7e-27 128.3 402 37.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 2.2e-27 127.9 375 40.0
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 8.4e-27 125.9 397 39.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.9e-26 124.8 395 39.0
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 7.2e-26 122.9 411 37.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 7.2e-26 122.9 411 37.0
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.2e-25 122.1 335 40.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.6e-22 111.7 513 33.3
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 4.8e-22 110.2 269 44.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 7.7e-20 102.8 306 39.2
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.0e-19 102.4 368 39.7
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 5.7e-15 86.7 299 38.5
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 6.9e-13 79.7 269 36.1
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.6e-12 77.8 249 38.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.0e-11 75.9 249 37.8
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.0e-11 75.9 442 30.1
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.9e-11 74.3 254 37.8
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 5.0e-11 73.6 182 40.7
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 5.0e-11 73.6 270 34.8
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.9e-10 71.6 255 36.9
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.9e-10 71.6 239 36.0
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 2.5e-10 71.2 248 35.9
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.5e-10 71.2 249 35.7
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.2e-10 70.9 462 28.8
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.6e-09 68.6 525 29.0
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.7e-09 67.8 382 33.2
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.7e-09 67.0 370 28.6
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 4.7e-09 67.0 370 28.6
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 6.1e-09 66.6 264 35.2
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 6.1e-09 66.6 514 27.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-08 65.5 546 27.1
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.8e-08 65.1 350 33.7
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 2.3e-08 64.7 245 36.7
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 3.9e-08 63.9 497 27.8
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 3.9e-08 63.9 500 28.0
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 6.7e-08 63.2 371 28.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 8.8e-08 62.8 374 30.5
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.1e-07 62.4 245 37.1
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.1e-07 62.4 266 36.5
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.0e-07 61.6 463 28.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.0e-07 61.6 346 33.2
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.0e-07 61.6 247 36.4
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.0e-07 61.6 247 36.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.0e-07 61.6 188 37.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 9.7e-07 59.3 499 28.1
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 9.7e-07 59.3 45 71.1
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.3e-06 58.9 245 33.9
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.7e-06 58.5 256 34.4
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.7e-06 58.5 489 28.4
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.2e-06 58.2 45 68.9
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.2e-06 58.2 45 71.1
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.8e-06 57.8 251 36.3
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.7e-06 57.4 45 64.4
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.8e-06 57.0 136 39.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 6.3e-06 56.6 119 37.8
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 6.3e-06 56.6 206 35.4
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 8.2e-06 56.2 275 35.3


User provided reference genes

Program Settings