Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 4.3e-110 401.4 205 100.0
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 1.7e-103 379.4 209 93.8
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 1.7e-103 379.4 209 93.8
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 5.6e-102 374.4 205 95.1
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 1.2e-88 330.1 196 86.7
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 7.9e-80 300.8 214 78.5
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 2.3e-79 299.3 214 78.0
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 2.3e-79 299.3 214 77.6
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 3.0e-79 298.9 218 77.1
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 3.9e-79 298.5 212 78.3
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 8.7e-79 297.4 214 78.0
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 7.9e-72 274.2 217 75.1
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 3.0e-71 272.3 217 75.6
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 5.6e-70 268.1 208 73.1
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 5.6e-70 268.1 208 73.1
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 1.6e-69 266.5 219 72.6
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 2.8e-69 265.8 219 74.9
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 4.8e-69 265.0 212 73.6
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 1.4e-65 253.4 211 72.0
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 6.0e-64 248.1 212 70.3
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 3.2e-57 225.7 214 65.4
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 7.2e-57 224.6 208 64.4
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 5.0e-42 175.3 209 57.9
AL1G34860 Arabidopsis lyrata HOM05D011160 ORTHO05D013203 2.0e-22 110.2 202 49.0
Carub.0001s2113 Capsella rubella HOM05D011160 ORTHO05D013203 1.3e-18 97.4 215 42.8
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 1.2e-16 90.9 203 40.9
CARHR022050 Cardamine hirsuta HOM05D011160 ORTHO05D013203 2.8e-16 89.7 217 43.3
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 4.7e-16 89.0 207 39.1
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 6.1e-16 88.6 207 37.2
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 1.4e-15 87.4 201 39.3
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 2.3e-15 86.7 203 35.5
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 3.0e-15 86.3 205 37.1
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 5.2e-15 85.5 202 37.1
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 6.8e-15 85.1 200 36.0
AT1G21695 Arabidopsis thaliana HOM05D011160 ORTHO05D013203 2.0e-14 83.6 213 42.7
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 2.6e-14 83.2 202 35.6
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 2.6e-14 83.2 220 36.4
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 4.4e-14 82.4 205 37.6
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 4.4e-14 82.4 207 37.7
BcaB07g32166 Brassica carinata HOM05D011160 ORTHO05D013203 5.7e-14 82.0 199 37.2
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 7.5e-14 81.6 207 36.2
Thhalv10009307m.g Eutrema salsugineum HOM05D011160 ORTHO05D013203 2.2e-13 80.1 190 44.7
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 2.2e-13 80.1 204 37.3
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 3.7e-13 79.3 209 34.9
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 3.7e-13 79.3 198 35.4
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 4.9e-13 79.0 202 34.7
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 4.9e-13 79.0 207 37.2
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 6.3e-13 78.6 198 36.4
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 4.1e-12 75.9 208 34.6
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 7.0e-12 75.1 206 35.0
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 7.0e-12 75.1 210 33.8
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 1.6e-11 73.9 203 35.5
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 3.5e-11 72.8 204 34.8
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 3.5e-11 72.8 197 37.1
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.7e-10 70.5 207 31.4
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 3.8e-10 69.3 200 35.0
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.5e-09 66.6 201 35.3
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 2.5e-09 66.6 202 36.1
Sp1g19250 Schrenkiella parvula HOM05D011160 ORTHO05D013203 5.6e-09 65.5 219 36.5
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 9.5e-09 64.7 204 36.8
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 9.5e-09 64.7 200 35.0
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 1.2e-08 64.3 199 35.7
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 1.2e-08 64.3 200 31.5
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 2.1e-08 63.5 199 31.7
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 2.8e-08 63.2 196 30.1
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 3.6e-08 62.8 200 34.5
BcaC05g26088 Brassica carinata HOM05D011160 ORTHO05D013203 6.1e-08 62.0 91 46.2
C05p20670 Brassica napus HOM05D011160 ORTHO05D013203 6.1e-08 62.0 91 46.2
BolC5t30766H Brassica oleracea HOM05D011160 ORTHO05D013203 6.1e-08 62.0 91 46.2
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 6.1e-08 62.0 197 32.0
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 8.0e-08 61.6 194 32.0
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.0e-07 61.2 188 34.0
A07p14960 Brassica napus HOM05D011160 ORTHO05D013203 1.4e-07 60.8 79 50.6
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 1.8e-07 60.5 203 30.5
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 1.8e-07 60.5 199 34.2
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 8.9e-07 58.2 197 30.5
A06p17780 Brassica napus HOM05D011160 ORTHO05D013203 1.2e-06 57.8 194 34.0
BraA06t24870Z Brassica rapa HOM05D011160 ORTHO05D013203 1.2e-06 57.8 194 34.0
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 1.5e-06 57.4 205 30.7
BcaC06g34900 Brassica carinata HOM05D011160 ORTHO05D013203 3.4e-06 56.2 124 40.3
C07p22010 Brassica napus HOM05D011160 ORTHO05D013203 3.4e-06 56.2 124 40.3
BolC7t42731H Brassica oleracea HOM05D011160 ORTHO05D013203 3.4e-06 56.2 124 40.3
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 3.4e-06 56.2 199 32.2
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 4.4e-06 55.8 199 31.7
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 5.7e-06 55.5 189 31.7
BcaB03g14257 Brassica carinata HOM05D011160 ORTHO05D013203 5.7e-06 55.5 196 34.2
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 5.7e-06 55.5 201 32.8
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.7e-06 55.5 207 34.3
Aqoxy5G02371 Aquilegia oxysepala HOM05D007332 ORTHO05D009297 7.5e-06 55.1 55 50.9
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 9.8e-06 54.7 202 29.2


User provided reference genes

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