Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 4.1e-296 1020.8 559 100.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-294 1015.8 559 99.6
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.3e-275 951.8 561 90.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.1e-269 932.9 565 88.7
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.8e-249 865.1 559 84.3
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-180 637.1 585 67.0
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.6e-122 442.6 714 47.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.3e-96 356.7 583 43.7
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.5e-80 304.7 539 46.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.8e-79 299.7 550 43.6
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.5e-72 278.1 572 42.3
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.0e-57 227.3 583 36.0
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.2e-39 167.9 203 48.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.7e-31 141.7 331 34.7
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 2.0e-29 134.8 289 36.0
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.7e-29 132.9 295 33.6
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.0e-28 132.5 295 33.6
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.7e-28 131.7 159 44.7
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 3.8e-28 130.6 295 34.6
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.0e-28 130.2 295 33.2
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 6.5e-28 129.8 222 40.5
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.9e-27 128.3 253 37.2
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.5e-27 127.9 300 33.3
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 9.4e-27 125.9 195 41.0
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.7e-26 124.4 294 33.3
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.4e-25 122.1 197 39.1
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.4e-25 122.1 197 39.1
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-25 122.1 148 45.3
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 6.8e-25 119.8 350 31.7
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 5.7e-24 116.7 197 38.6
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-23 115.5 201 36.3
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.3e-23 115.5 293 32.1
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.8e-23 114.4 292 31.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.1e-22 112.5 256 33.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.1e-22 110.9 277 31.8
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.1e-22 110.5 217 34.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.1e-22 110.5 328 30.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 7.0e-22 109.8 188 36.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 9.1e-22 109.4 186 39.2
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.0e-21 108.2 345 28.7
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.5e-19 100.1 259 32.4
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 4.7e-18 97.1 191 36.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 8.0e-18 96.3 128 42.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.0e-17 95.9 184 37.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.8e-17 95.1 148 39.9
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 6.8e-17 93.2 288 28.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.5e-16 92.0 116 43.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.0e-16 91.7 335 26.0
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 3.7e-15 87.4 207 33.8
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 4.9e-15 87.0 188 33.0
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 6.3e-15 86.7 104 47.1
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.4e-14 84.7 211 31.8
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 5.4e-14 83.6 128 39.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 3.5e-13 80.9 187 31.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.5e-13 80.9 156 32.1
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.9e-13 80.1 154 31.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 7.8e-13 79.7 198 32.8
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 7.8e-13 79.7 198 29.8
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.0e-12 79.3 218 28.9
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.3e-12 78.2 134 38.8
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.3e-12 78.2 105 42.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 5.0e-12 77.0 126 38.1
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.6e-12 76.6 228 29.8
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 8.6e-12 76.3 111 36.9
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-11 75.9 228 28.1
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.9e-11 75.1 104 40.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.3e-11 74.3 161 32.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.3e-11 74.3 102 45.1
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.3e-11 74.3 132 33.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 5.6e-11 73.6 152 32.9
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.6e-11 73.6 111 38.7
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 7.3e-11 73.2 111 38.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 7.3e-11 73.2 238 27.3
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 9.5e-11 72.8 110 41.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.8e-10 71.2 155 31.0
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 3.6e-10 70.9 192 27.1
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.6e-10 70.9 108 38.0
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 4.7e-10 70.5 175 34.9
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.7e-10 70.5 183 27.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 4.7e-10 70.5 246 29.7
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 4.7e-10 70.5 145 27.6
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.2e-10 70.1 216 28.7
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.2e-10 70.1 216 28.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 8.0e-10 69.7 108 37.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.0e-09 69.3 111 35.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.0e-09 69.3 120 29.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.0e-09 69.3 312 28.8
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.4e-09 68.9 243 29.6
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.8e-09 68.6 102 39.2
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.8e-09 68.6 274 26.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.3e-09 68.2 145 29.7
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.3e-09 68.2 105 37.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 2.3e-09 68.2 115 36.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.3e-09 68.2 141 31.2
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.3e-09 68.2 152 28.9
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.3e-09 68.2 156 29.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.1e-09 67.8 104 39.4
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.1e-09 67.8 291 26.8
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 3.1e-09 67.8 106 37.7
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 6.8e-09 66.6 146 30.1
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 8.9e-09 66.2 122 36.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 8.9e-09 66.2 104 36.5
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.9e-09 66.2 216 28.2
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.9e-09 66.2 319 26.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 8.9e-09 66.2 105 36.2
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.2e-08 65.9 103 31.1
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-08 65.5 104 39.4
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.0e-08 65.1 132 34.1
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.0e-08 65.1 132 34.1
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 2.6e-08 64.7 117 35.0
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 3.4e-08 64.3 113 31.9
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.4e-08 63.9 135 34.1
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 4.4e-08 63.9 305 26.9
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 7.5e-08 63.2 278 26.6
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 9.8e-08 62.8 197 30.5
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 9.8e-08 62.8 212 25.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.8e-08 62.8 111 33.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 9.8e-08 62.8 304 24.3
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.7e-07 62.0 105 35.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.7e-07 60.8 326 27.6
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.9e-07 60.5 132 28.8
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 4.9e-07 60.5 182 26.9
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.3e-07 59.7 106 33.0
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 8.3e-07 59.7 326 28.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.3e-07 59.7 132 28.8
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 1.4e-06 58.9 93 36.6
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.4e-06 58.9 146 29.5
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 1.4e-06 58.9 93 38.7
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.9e-06 58.5 155 27.7
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.4e-06 58.2 144 26.4
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.4e-06 58.2 144 26.4
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 5.4e-06 57.0 151 29.1
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 5.4e-06 57.0 151 29.1
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.0e-06 56.6 128 31.2


User provided reference genes

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