Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 3.9e-108 394.8 199 100.0
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.6e-106 389.4 198 98.5
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 3.2e-102 375.2 188 99.5
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 3.2e-102 375.2 188 99.5
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 3.5e-101 371.7 188 98.4
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 9.6e-91 337.0 188 86.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.2e-88 330.1 188 84.6
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 7.6e-88 327.4 184 84.8
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.3e-84 315.8 188 81.9
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 7.4e-83 310.8 187 80.7
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.1e-81 307.0 188 79.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.8e-81 306.2 188 79.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.9e-78 296.2 187 74.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 7.9e-77 290.8 188 72.9
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.8e-74 282.3 152 92.8
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 6.3e-66 254.6 188 60.1
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.0e-64 249.6 189 59.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.5e-64 248.4 189 59.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 6.5e-63 244.6 188 58.5
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 6.5e-63 244.6 190 57.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.4e-62 243.4 187 59.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.4e-62 243.4 183 59.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.5e-62 242.7 188 58.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.2e-62 242.3 188 58.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.2e-62 242.3 188 59.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.2e-62 241.9 188 59.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.5e-62 241.5 188 59.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.5e-62 241.5 188 59.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.5e-62 241.5 188 59.0
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 7.2e-62 241.1 188 59.0
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.2e-62 241.1 190 57.4
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.2e-61 240.4 188 58.0
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.6e-61 240.0 185 58.9
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 2.1e-61 239.6 188 59.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.1e-61 239.6 188 58.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.6e-61 238.4 188 56.9
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.0e-60 237.3 188 58.0
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.9e-60 235.3 188 57.4
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.9e-60 235.3 182 57.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 5.1e-60 235.0 188 57.4
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 5.1e-60 235.0 177 62.1
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.7e-60 234.6 182 57.1
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 6.7e-60 234.6 182 58.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 8.8e-60 234.2 190 57.4
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.5e-59 233.4 190 57.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.0e-59 233.0 188 56.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.6e-59 232.6 190 54.7
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.3e-59 232.3 188 56.9
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.3e-59 232.3 182 58.8
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.4e-59 231.9 188 57.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.4e-59 231.9 188 56.4
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.4e-59 231.9 188 59.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 5.7e-59 231.5 190 55.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 7.4e-59 231.1 183 56.8
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 9.7e-59 230.7 182 57.1
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.3e-58 230.3 182 56.0
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.3e-58 230.3 183 57.9
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.3e-58 230.3 188 56.4
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.7e-58 229.9 181 58.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.2e-58 229.6 188 56.9
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 4.8e-58 228.4 182 57.1
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 6.3e-58 228.0 182 56.0
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.1e-57 227.3 188 53.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-57 226.9 189 56.6
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.1e-57 225.7 188 55.9
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.1e-57 225.7 188 56.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 6.9e-57 224.6 190 54.7
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 6.9e-57 224.6 194 54.1
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 9.1e-57 224.2 182 57.1
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 9.1e-57 224.2 183 57.4
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.6e-56 222.6 181 55.8
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.6e-56 222.6 183 54.6
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 3.4e-56 222.2 184 54.9
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.4e-56 222.2 188 55.3
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 4.5e-56 221.9 190 52.6
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.5e-56 221.9 183 56.8
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 5.9e-56 221.5 182 55.5
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 5.9e-56 221.5 183 54.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 5.9e-56 221.5 187 54.5
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 7.7e-56 221.1 188 53.7
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 7.7e-56 221.1 183 54.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-55 219.9 190 52.1
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.9e-55 219.2 182 53.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 6.5e-55 218.0 187 52.9
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 8.5e-55 217.6 190 54.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.1e-54 217.2 183 53.6
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.5e-54 216.1 182 53.8
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.2e-54 215.7 184 54.3
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.2e-54 215.7 176 56.8
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.2e-54 215.7 188 53.2
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.1e-53 213.0 176 56.2
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.1e-53 213.0 183 51.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.6e-53 212.2 182 53.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.7e-53 211.8 187 50.8
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 7.9e-53 211.1 205 48.8
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.3e-52 209.5 181 54.1
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.9e-52 208.8 188 53.7
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 5.2e-52 208.4 189 51.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 6.7e-52 208.0 187 49.2
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.1e-51 207.2 188 52.7
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.1e-51 207.2 182 54.9
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.5e-51 206.8 188 52.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.5e-51 206.8 188 52.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.4e-51 204.5 188 51.6
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.7e-50 202.2 178 53.4
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.3e-50 201.4 155 57.4
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.1e-49 200.7 197 48.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.4e-49 199.5 209 46.4
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.4e-49 199.5 183 51.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.1e-49 198.7 152 59.2
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 9.1e-49 197.6 212 45.3
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.6e-48 196.8 183 51.9
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 7.7e-48 194.5 154 55.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.0e-47 194.1 206 47.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 5.0e-47 191.8 207 47.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 8.0e-45 184.5 151 55.0
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.0e-44 182.6 160 51.9
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.7e-43 177.6 142 57.7
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.7e-42 176.8 188 46.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-41 173.7 191 47.1
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.8e-41 173.3 196 43.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.4e-41 172.9 184 47.3
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 2.2e-39 166.4 124 61.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 9.4e-38 161.0 171 49.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.6e-37 160.2 231 41.6
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.0e-36 156.0 155 50.3
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.7e-34 150.2 189 41.8
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 4.8e-34 148.7 200 41.5
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.0e-31 141.0 183 39.3
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.5e-30 137.1 186 38.7
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.6e-29 132.5 130 48.5
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.8e-26 122.9 185 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.3e-26 121.3 196 34.7
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 9.2e-25 117.9 184 35.9
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.7e-23 113.6 58 89.7
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.5e-19 100.5 116 42.2
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 7.5e-19 98.2 76 60.5
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.9e-18 96.3 138 39.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-17 94.0 88 50.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.9e-15 85.9 97 42.3
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 3.0e-07 59.7 176 22.7


User provided reference genes

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