Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 4.3e-121 438.0 213 100.0
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 2.7e-59 232.6 209 55.0
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 1.8e-58 229.9 209 54.1
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 8.8e-58 227.6 209 54.1
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 4.4e-57 225.3 209 53.1
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 8.2e-56 221.1 215 51.2
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 3.1e-55 219.2 198 54.0
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 3.1e-55 219.2 217 51.6
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-47 193.7 209 48.8
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-46 190.7 205 48.3
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-44 184.1 205 43.9
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-44 184.1 209 46.9
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 1.1e-44 184.1 144 59.0
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 9.4e-44 181.0 208 46.6
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 1.6e-43 180.3 205 46.3
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 2.3e-42 176.4 209 45.0
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 5.7e-41 171.8 210 44.8
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 9.8e-41 171.0 211 44.1
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 9.8e-41 171.0 173 49.7
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 1.8e-39 166.8 208 43.8
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 3.1e-39 166.0 206 43.7
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 1.6e-38 163.7 211 43.1
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 5.9e-38 161.8 217 40.1
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 7.7e-38 161.4 182 47.8
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 3.2e-36 156.0 209 40.7
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.2e-36 155.6 199 42.7
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 1.6e-35 153.7 208 41.8
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-34 150.6 200 39.0
BcaB03g16082 Brassica carinata HOM05D026233 ORTHO05D005130 3.0e-34 149.4 84 82.1
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.2e-34 148.7 204 40.2
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 1.5e-33 147.1 197 40.6
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 2.0e-33 146.7 162 45.7
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.5e-33 144.8 197 40.1
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 1.7e-32 143.7 208 38.5
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 3.7e-32 142.5 145 46.9
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 8.3e-32 141.4 206 40.8
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-31 141.0 201 39.8
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 7.0e-31 138.3 207 39.1
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 7.0e-31 138.3 207 39.1
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 1.0e-29 134.4 158 44.3
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 1.3e-29 134.0 144 47.9
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 6.6e-29 131.7 158 42.4
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 8.6e-29 131.3 200 36.0
BcaB07g33249 Brassica carinata HOM05D026233 ORTHO05D005130 1.1e-28 131.0 93 72.0
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 2.5e-28 129.8 209 37.3
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 4.3e-28 129.0 151 44.4
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 4.3e-28 129.0 151 44.4
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 6.1e-27 125.2 203 36.5
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.0e-26 122.5 202 36.1
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 2.0e-25 120.2 124 53.2
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 1.3e-24 117.5 174 37.9
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 1.3e-24 117.5 205 32.2
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.9e-24 116.3 178 38.8
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.8e-23 113.6 205 32.2
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.8e-23 113.6 167 37.1
Aa31LG6G9990 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.2e-23 112.8 125 47.2
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 3.2e-23 112.8 116 52.6
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.1e-23 112.5 140 40.7
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 5.4e-23 112.1 169 36.7
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 1.6e-22 110.5 169 34.9
AT2G06420 Arabidopsis thaliana HOM05D003554 ORTHO05D005130 2.7e-22 109.8 92 53.3
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 5.9e-22 108.6 116 50.0
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 7.8e-22 108.2 169 36.1
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 7.8e-22 108.2 169 36.1
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 1.3e-21 107.5 112 50.9
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 3.9e-21 105.9 218 32.6
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 8.6e-21 104.8 169 34.9
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 1.1e-20 104.4 210 34.3
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-20 104.4 141 37.6
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 1.9e-20 103.6 74 59.5
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 2.5e-20 103.2 187 32.6
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 5.6e-20 102.1 169 34.9
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 5.6e-20 102.1 209 33.5
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 9.5e-20 101.3 210 33.8
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 9.5e-20 101.3 141 36.9
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 4.7e-19 99.0 169 34.3
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 1.4e-18 97.4 110 42.7
BcaC08g45909 Brassica carinata HOM05D003554 ORTHO05D014926 2.3e-18 96.7 114 47.4
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.8e-18 95.1 141 39.0
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.8e-18 95.1 190 33.7
THA.LOC109116427 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.9e-18 94.7 205 33.2
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.5e-17 94.0 137 35.8
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 1.5e-17 94.0 169 33.1
BcaB02g11423 Brassica carinata HOM05D003554 ORTHO05D014926 2.0e-17 93.6 154 37.0
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.6e-17 93.2 208 31.7
BcaB03g16118 Brassica carinata HOM05D003554 ORTHO05D005130 4.4e-17 92.4 141 39.7
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 3.7e-16 89.4 109 47.7
THA.LOC109117170 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.9e-16 89.0 212 31.1
THA.LOC104823081 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.3e-16 88.2 183 31.7
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 1.1e-15 87.8 143 34.3
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 2.4e-15 86.7 90 45.6
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 2.4e-15 86.7 90 45.6
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 2.4e-15 86.7 90 45.6
THA.LOC104811336 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.2e-15 86.3 184 32.1
THA.LOC104807874 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 5.4e-15 85.5 184 32.1
THA.LOC104825259 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 9.2e-15 84.7 201 29.9
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 1.2e-14 84.3 91 45.1
Carub.0005s0863 Capsella rubella HOM05D003554 ORTHO05D005130 2.0e-14 83.6 78 47.4
THA.LOC104820187 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.5e-14 82.8 182 30.8
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 4.6e-14 82.4 90 43.3
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 6.0e-14 82.0 201 29.9
Thhalv10000512m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 6.0e-14 82.0 83 49.4
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 7.8e-14 81.6 99 47.5
THA.LOC104810514 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 7.8e-14 81.6 189 29.1
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 1.3e-13 80.9 103 43.7
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 1.3e-13 80.9 114 37.7
Sp7g02635 Schrenkiella parvula HOM05D003554 ORTHO05D005130 1.3e-13 80.9 54 64.8
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 1.7e-13 80.5 90 43.3
BcaB08g34926 Brassica carinata HOM05D007984 ORTHO05D013027 5.0e-13 79.0 121 44.6
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 8.6e-13 78.2 123 38.2
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 1.1e-12 77.8 125 37.6
THA.LOC104800374 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.1e-12 77.8 167 29.9
C08p07220 Brassica napus HOM05D008316 ORTHO05D017243 1.5e-12 77.4 85 43.5
Aa31sc471G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.9e-12 77.0 120 37.5
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 1.9e-12 77.0 114 37.7
BcaB08g35153 Brassica carinata HOM05D007984 ORTHO05D013027 2.5e-12 76.6 140 35.0
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 4.3e-12 75.9 119 37.0
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 5.6e-12 75.5 91 41.8
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 9.5e-12 74.7 91 40.7
THA.LOC104799670 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 9.5e-12 74.7 157 32.5
THA.LOC104809668 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 9.5e-12 74.7 183 29.0
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 1.6e-11 73.9 121 36.4
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 1.6e-11 73.9 119 36.1
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 1.6e-11 73.9 119 37.0
BcaB02g10972 Brassica carinata HOM05D003554 ORTHO05D014926 2.1e-11 73.6 90 43.3
Aa31sc318G10 Aethionema arabicum HOM05D028239 ORTHO05D005130 3.6e-11 72.8 104 38.5
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 4.7e-11 72.4 121 35.5
THA.LOC104807807 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.1e-11 71.6 123 35.0
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 2.3e-10 70.1 123 34.1
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 2.3e-10 70.1 65 49.2
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.8e-10 68.6 132 36.4
BcaC03g13667 Brassica carinata HOM05D007984 ORTHO05D039917 1.2e-09 67.8 102 42.2
THA.LOC104798881 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.5e-09 67.4 119 33.6
Aa31sc137G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.6e-09 66.6 86 43.0
C08p06800 Brassica napus HOM05D003554 ORTHO05D005130 2.6e-09 66.6 86 43.0
BcaC03g17046 Brassica carinata HOM05D003554 ORTHO05D039837 3.4e-09 66.2 82 45.1
THA.LOC109116278 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.4e-09 65.9 183 28.4
Aa31LG5G24000 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.8e-09 65.5 57 47.4
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.7e-08 63.9 94 38.3
BcaB04g18306 Brassica carinata HOM05D007984 ORTHO05D013027 1.7e-08 63.9 150 33.3
Aa31sc45G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.2e-08 63.5 63 47.6
Oeu031011.1 Olea europaea HOM05D000700 ORTHO05D000397 2.9e-08 63.2 118 34.7
THA.LOC104798651 Tarenaya hassleriana HOM05D003554 ORTHO05D015748 2.9e-08 63.2 121 32.2
THA.LOC109116460 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.9e-08 63.2 133 33.1
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 3.7e-08 62.8 81 39.5
C09p42590 Brassica napus HOM05D008825 ORTHO05D017243 4.9e-08 62.4 67 41.8
BolC9t56607H Brassica oleracea HOM05D008825 ORTHO05D017243 4.9e-08 62.4 61 44.3
BcaC07g39489 Brassica carinata HOM05D009532 ORTHO05D013511 1.1e-07 61.2 121 33.9
Oeu062254.1 Olea europaea HOM05D000700 ORTHO05D000397 1.4e-07 60.8 118 33.9
THA.LOC104798704 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.4e-07 60.1 96 34.4
A08p06570 Brassica napus HOM05D008825 ORTHO05D017243 3.2e-07 59.7 67 41.8
BraA08t32673Z Brassica rapa HOM05D008825 ORTHO05D017243 3.2e-07 59.7 67 41.8
BcaC01g00119 Brassica carinata HOM05D003554 ORTHO05D014926 4.1e-07 59.3 83 42.2
Aa31sc151G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.4e-07 58.9 58 51.7
BcaB02g10640 Brassica carinata HOM05D003554 ORTHO05D005130 1.6e-06 57.4 68 47.1
BcaC05g27358 Brassica carinata HOM05D003554 ORTHO05D014926 2.1e-06 57.0 85 37.6
BcaB06g28000 Brassica carinata HOM05D009532 ORTHO05D005130 3.5e-06 56.2 63 46.0
BcaB08g35475 Brassica carinata HOM05D007984 ORTHO05D013027 4.6e-06 55.8 105 35.2


User provided reference genes

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