Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 8.3e-92 340.9 248 100.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.6e-90 336.7 248 98.0
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.0e-86 322.0 248 94.0
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 4.6e-82 308.5 248 85.5
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 5.1e-73 278.5 189 93.7
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 9.2e-67 257.7 248 77.0
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.1e-64 250.8 260 74.2
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.6e-61 239.6 248 78.2
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 3.0e-57 226.1 144 80.6
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 7.3e-56 221.5 250 76.8
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 3.1e-54 216.1 249 52.2
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.0e-54 215.7 248 71.4
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 4.0e-54 215.7 181 79.0
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.5e-53 213.8 140 77.9
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.2e-50 204.1 144 67.4
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 6.0e-50 201.8 135 76.3
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 9.6e-48 194.5 139 66.9
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 9.6e-48 194.5 144 63.2
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 6.9e-46 188.3 146 61.0
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.4e-45 186.0 150 62.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 8.4e-44 181.4 147 63.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 2.5e-40 169.9 144 53.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 4.3e-40 169.1 146 55.5
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.2e-37 161.0 146 54.8
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.2e-37 161.0 146 55.5
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.5e-37 160.6 149 53.7
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 9.9e-37 157.9 142 55.6
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.9e-36 156.4 147 55.1
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 4.9e-36 155.6 143 51.7
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 6.4e-36 155.2 148 51.4
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 6.4e-36 155.2 149 50.3
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.4e-36 155.2 146 53.4
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.4e-36 155.2 148 54.1
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.5e-35 153.3 148 50.7
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 2.5e-35 153.3 146 54.8
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 7.1e-35 151.8 146 50.0
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 9.3e-35 151.4 150 52.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-34 151.0 146 50.0
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.1e-34 150.2 150 52.0
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.7e-34 149.8 148 50.0
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.5e-34 149.4 144 50.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 3.5e-34 149.4 144 51.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.6e-34 149.1 143 53.1
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 7.9e-34 148.3 146 48.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 7.9e-34 148.3 142 52.8
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.0e-33 147.9 137 52.6
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.3e-33 147.5 107 75.7
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.3e-33 147.5 149 52.3
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.3e-33 146.7 147 51.7
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.0e-33 146.4 137 51.8
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.1e-33 145.6 146 51.4
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 6.7e-33 145.2 146 49.3
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 6.7e-33 145.2 141 52.5
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 8.7e-33 144.8 148 50.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 8.7e-33 144.8 144 50.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.1e-32 144.4 145 51.0
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.1e-32 144.4 147 53.7
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.1e-32 144.4 144 52.1
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 2.5e-32 143.3 143 49.0
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 3.3e-32 142.9 146 47.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 5.6e-32 142.1 144 47.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 5.6e-32 142.1 268 34.7
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 9.6e-32 141.4 144 49.3
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.6e-31 140.6 142 50.7
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.8e-31 139.8 144 49.3
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 2.8e-31 139.8 147 51.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.8e-31 139.8 143 53.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 4.8e-31 139.0 158 49.4
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 6.2e-31 138.7 146 46.6
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.8e-30 137.1 143 47.6
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.4e-30 136.7 142 50.7
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 3.1e-30 136.3 144 45.8
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 3.1e-30 136.3 144 45.8
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 3.1e-30 136.3 156 48.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.3e-30 135.6 143 47.6
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 5.3e-30 135.6 147 47.6
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 5.3e-30 135.6 150 50.0
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.9e-30 135.2 143 48.3
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.9e-30 135.2 149 47.7
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 9.0e-30 134.8 150 46.7
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 9.0e-30 134.8 147 47.6
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.0e-29 133.7 146 49.3
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.6e-29 133.3 147 46.9
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.4e-29 132.9 144 47.2
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 3.4e-29 132.9 143 48.3
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.5e-29 132.5 144 52.1
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.5e-29 132.5 143 47.6
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.6e-29 131.7 143 46.9
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.0e-28 131.3 148 46.6
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.3e-28 131.0 142 49.3
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 5.5e-27 125.6 144 44.4
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 7.1e-27 125.2 149 46.3
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 9.3e-27 124.8 147 47.6
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 9.3e-27 124.8 146 47.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.7e-26 123.2 148 48.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 3.5e-26 122.9 147 47.6
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 6.1e-26 122.1 152 46.1
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 7.9e-26 121.7 73 86.3
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.1e-25 119.0 143 41.3
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 7.4e-24 115.2 269 29.4
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.6e-23 114.0 146 39.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.2e-23 113.6 104 54.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.8e-23 112.5 143 42.7
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 8.2e-23 111.7 144 43.8
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.3e-22 109.0 144 41.0
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 2.0e-21 107.1 111 51.4
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 3.4e-21 106.3 145 43.4
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.0e-20 104.8 108 50.9
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.8e-20 102.8 264 28.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.4e-19 100.9 145 39.3
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.2e-18 97.8 142 39.4
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.7e-18 96.7 179 34.6
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 6.1e-18 95.5 144 42.4
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.0e-17 93.2 69 60.9
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.0e-17 93.2 130 36.9
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.1e-17 92.4 130 36.9
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 5.1e-17 92.4 247 25.9
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 5.7e-16 89.0 114 37.7
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 5.7e-16 89.0 148 35.1
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.7e-15 87.4 145 39.3
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 2.8e-15 86.7 229 29.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.2e-15 85.1 106 46.2
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.4e-14 84.3 94 44.7
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.1e-14 82.8 119 40.3
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 7.7e-13 78.6 69 52.2
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.0e-09 68.2 76 43.4
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.8e-09 67.4 110 35.5
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 3.9e-09 66.2 97 38.1
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.3e-07 61.2 95 37.9
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.4e-06 57.0 66 40.9


User provided reference genes

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