Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 3.4e-115 418.3 207 100.0
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 3.8e-98 361.7 203 91.6
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 4.8e-53 211.8 124 90.3
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 1.8e-44 183.3 101 89.1
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 5.0e-42 175.3 87 97.7
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 4.3e-41 172.2 87 94.3
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 9.5e-41 171.0 87 93.1
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 2.8e-40 169.5 87 94.3
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 8.0e-40 167.9 87 92.0
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.0e-39 167.5 87 93.1
BraA02t07008Z Brassica rapa HOM05D007721 ORTHO05D039196 6.2e-32 141.7 69 95.7
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 1.9e-25 120.2 80 72.5
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 8.9e-23 111.3 73 72.6
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 1.7e-21 107.1 74 67.6
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 2.9e-21 106.3 73 67.1
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 2.9e-21 106.3 73 67.1
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 3.7e-21 105.9 73 69.9
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.1e-20 104.4 79 60.8
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.1e-20 104.4 87 58.6
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.1e-20 104.4 75 65.3
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 1.1e-20 104.4 73 68.5
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.4e-20 104.0 80 60.0
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 2.4e-20 103.2 76 61.8
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 2.4e-20 103.2 73 68.5
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 5.4e-20 102.1 88 55.7
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 7.1e-20 101.7 66 72.7
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.2e-19 100.9 80 57.5
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 1.2e-19 100.9 87 51.7
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 2.1e-19 100.1 73 61.6
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.7e-19 99.8 87 51.7
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.7e-19 99.8 75 65.3
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 3.5e-19 99.4 73 64.4
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 4.6e-19 99.0 75 61.3
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.0e-19 98.6 74 63.5
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 7.8e-19 98.2 80 56.2
BcaC09g51220 Brassica carinata HOM05D007721 ORTHO05D039196 1.0e-18 97.8 84 63.1
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.7e-18 97.1 72 62.5
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.3e-18 96.7 87 50.6
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 3.9e-18 95.9 74 63.5
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 5.1e-18 95.5 73 64.4
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 6.6e-18 95.1 81 64.2
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 8.6e-18 94.7 74 62.2
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.5e-17 94.0 73 61.6
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.5e-17 94.0 65 66.2
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 2.5e-17 93.2 80 58.8
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 2.5e-17 93.2 107 47.7
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.5e-17 93.2 77 57.1
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 2.5e-17 93.2 80 61.2
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 3.3e-17 92.8 74 62.2
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.3e-17 92.8 77 57.1
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.3e-17 92.8 77 57.1
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 3.3e-17 92.8 74 58.1
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 5.6e-17 92.0 79 54.4
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 5.6e-17 92.0 83 55.4
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 5.6e-17 92.0 76 56.6
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 7.3e-17 91.7 75 58.7
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 7.3e-17 91.7 74 62.2
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 7.3e-17 91.7 88 54.5
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 1.2e-16 90.9 87 51.7
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 1.6e-16 90.5 83 55.4
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.6e-16 90.5 74 60.8
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 3.6e-16 89.4 74 59.5
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 4.7e-16 89.0 85 51.8
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 6.2e-16 88.6 92 52.2
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.1e-15 87.8 73 58.9
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 5.2e-15 85.5 72 54.2
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 6.8e-15 85.1 72 56.9
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 8.9e-15 84.7 74 58.1
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 1.2e-14 84.3 74 55.4
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 1.5e-14 84.0 74 55.4
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 2.0e-14 83.6 72 55.6
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 4.4e-14 82.4 53 71.7
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 4.4e-14 82.4 53 71.7
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 9.9e-14 81.3 74 52.7
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.1e-12 77.8 72 51.4
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 4.2e-12 75.9 92 45.7
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 2.1e-11 73.6 75 49.3
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 6.0e-11 72.0 58 58.6
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.0e-10 71.2 91 41.8
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 1.3e-10 70.9 60 51.7
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 9.6e-09 64.7 57 57.9
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 2.6e-06 56.6 54 46.3
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 3.4e-06 56.2 59 40.7


User provided reference genes

Program Settings