Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p32140 Brassica napus HOM05D002552 ORTHO05D002700 5.1e-65 251.5 192 100.0
BcaC03g15532 Brassica carinata HOM05D002552 ORTHO05D002700 3.7e-63 245.4 192 97.4
BolC2t09251H Brassica oleracea HOM05D002552 ORTHO05D002700 7.6e-61 237.7 193 96.4
A02p19590 Brassica napus HOM05D002552 ORTHO05D002700 2.4e-46 189.5 194 68.0
BraA02t06996Z Brassica rapa HOM05D002552 ORTHO05D002700 2.0e-45 186.4 195 80.5
BcaB05g24876 Brassica carinata HOM05D002552 ORTHO05D002700 4.7e-42 175.3 189 51.9
BcaB05g24874 Brassica carinata HOM05D002552 ORTHO05D002700 8.0e-42 174.5 208 50.0
BcaB05g24875 Brassica carinata HOM05D002552 ORTHO05D002700 1.4e-30 137.1 249 39.4
BcaB05g24877 Brassica carinata HOM05D002552 ORTHO05D002700 2.5e-27 126.3 82 73.2
A07p40500 Brassica napus HOM05D002627 ORTHO05D002823 1.6e-21 107.1 79 62.0
BraA07t31595Z Brassica rapa HOM05D002552 ORTHO05D002700 2.0e-21 106.7 79 60.8
Sp5g30000 Schrenkiella parvula HOM05D002552 ORTHO05D002700 3.5e-21 105.9 79 62.0
CARHR068190 Cardamine hirsuta HOM05D002552 ORTHO05D002700 4.5e-21 105.5 79 62.0
C06p48890 Brassica napus HOM05D002552 ORTHO05D002700 1.7e-20 103.6 78 60.3
BolC6t39925H Brassica oleracea HOM05D002552 ORTHO05D002700 1.7e-20 103.6 78 60.3
Thhalv10018832m.g Eutrema salsugineum HOM05D002552 ORTHO05D002700 8.6e-20 101.3 81 59.3
Aa31LG4G5090 Aethionema arabicum HOM05D002552 ORTHO05D002700 2.5e-19 99.8 79 55.7
Carub.0002s2165 Capsella rubella HOM05D002552 ORTHO05D002700 1.2e-18 97.4 79 58.2
AL2G34750 Arabidopsis lyrata HOM05D002552 ORTHO05D002700 2.1e-18 96.7 79 58.2
AT1G74870 Arabidopsis thaliana HOM05D002552 ORTHO05D002700 8.0e-18 94.7 79 57.0
THA.LOC104809223 Tarenaya hassleriana HOM05D002552 ORTHO05D002700 1.0e-17 94.4 78 61.5
CSS0027214 Camellia sinensis var. sinensis HOM05D002552 ORTHO05D002700 8.0e-10 68.2 75 45.3
ECA246G1618 Erigeron canadensis HOM05D002552 ORTHO05D002700 1.0e-09 67.8 55 50.9
HanXRQChr05g0151501 Helianthus annuus HOM05D002552 ORTHO05D002700 1.8e-09 67.0 55 50.9
HanXRQChr11g0327401 Helianthus annuus HOM05D002552 ORTHO05D002700 2.3e-09 66.6 49 55.1
CSS0008001 Camellia sinensis var. sinensis HOM05D002552 ORTHO05D002700 4.0e-09 65.9 63 47.6
MD06G1182900 Malus domestica HOM05D002552 ORTHO05D002700 6.8e-09 65.1 66 45.5
Actinidia19071 Actinidia chinensis HOM05D002552 ORTHO05D002700 1.2e-08 64.3 66 43.9
MCO13G564 Micromonas commoda HOM05D000279 ORTHO05D000498 1.2e-08 64.3 58 43.1
SGA_v2.0_scaffold25G10855 Striga asiatica HOM05D002552 ORTHO05D002700 1.2e-08 64.3 48 52.1
Atru.chr6.2167 Acer truncatum HOM05D002552 ORTHO05D002700 1.5e-08 63.9 64 43.8
AUR62014569 Chenopodium quinoa HOM05D002552 ORTHO05D002700 1.5e-08 63.9 58 48.3
Hma1.2p1_0572F.1_g181040 Hydrangea macrophylla HOM05D002552 ORTHO05D002700 1.5e-08 63.9 74 43.2
Solyc03g113700.3 Solanum lycopersicum HOM05D002552 ORTHO05D002700 1.5e-08 63.9 50 52.0
Sopen03g032750 Solanum pennellii HOM05D002552 ORTHO05D002700 1.5e-08 63.9 50 52.0
PGSC0003DMG400024467 Solanum tuberosum HOM05D002552 ORTHO05D002700 1.5e-08 63.9 50 52.0
Actinidia34966 Actinidia chinensis HOM05D002552 ORTHO05D002700 2.0e-08 63.5 66 43.9
Aa31LG11G730 Aethionema arabicum HOM05D002552 ORTHO05D002700 2.0e-08 63.5 52 51.9
CAN.G853.31 Capsicum annuum HOM05D002552 ORTHO05D002700 2.0e-08 63.5 74 41.9
MD14G1188800 Malus domestica HOM05D002552 ORTHO05D002700 2.0e-08 63.5 66 43.9
Ca_04237_v3 Cicer arietinum L. HOM05D002552 ORTHO05D002700 2.6e-08 63.2 73 42.5
DCAR_016521 Daucus carota HOM05D002552 ORTHO05D002700 2.6e-08 63.2 74 41.9
DCAR_032305 Daucus carota HOM05D002552 ORTHO05D002700 2.6e-08 63.2 48 54.2
Dinv35005 Davidia involucrata HOM05D000629 ORTHO05D000576 2.6e-08 63.2 64 43.8
CBR_g50372 Chara braunii HOM05D002552 ORTHO05D002700 3.4e-08 62.8 54 42.6
FvH4_6g49800 Fragaria vesca HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
FAN02G1473 Fragaria x ananassa HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
FAN05G0354 Fragaria x ananassa HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
FAN09G2339 Fragaria x ananassa HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
FAN14G1601 Fragaria x ananassa HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
Mapoly0018s0021 Marchantia polymorpha HOM05D002552 ORTHO05D002700 3.4e-08 62.8 47 51.1
Oeu005684.2 Olea europaea HOM05D002552 ORTHO05D002700 3.4e-08 62.8 66 42.4
Peaxi162Scf00017g02226 Petunia axillaris HOM05D002552 ORTHO05D002700 3.4e-08 62.8 50 50.0
RcHm_v2.0_Chr2g0169941 Rosa chinensis HOM05D002552 ORTHO05D002700 3.4e-08 62.8 64 43.8
Zm00001eb080490 Zea mays HOM05D002552 ORTHO05D002700 3.4e-08 62.8 56 46.4
Migut.D01900 Erythranthe guttata HOM05D002552 ORTHO05D002700 4.4e-08 62.4 48 52.1
MD09G1041200 Malus domestica HOM05D002552 ORTHO05D002700 4.4e-08 62.4 64 43.8
MapolyY_A0004 Marchantia polymorpha HOM05D002552 ORTHO05D002700 4.4e-08 62.4 47 51.1
QL02p078997 Quercus lobata HOM05D002552 ORTHO05D002700 4.4e-08 62.4 49 51.0
TAR622G0500 Trochodendron aralioides HOM05D002552 ORTHO05D002700 4.4e-08 62.4 48 50.0
Ah.11g046320 Amaranthus hybridus HOM05D002552 ORTHO05D002700 5.8e-08 62.0 74 43.2
Haze_14613 Corylus avellana HOM05D000629 ORTHO05D000576 5.8e-08 62.0 48 50.0
Actinidia37690 Actinidia chinensis HOM05D002552 ORTHO05D002700 7.5e-08 61.6 73 41.1
AagrBONN_evm.TU.Sc2ySwM_368.519 Anthoceros agrestis HOM05D002552 ORTHO05D002700 7.5e-08 61.6 59 42.4
arahy.Tifrunner.gnm1.ann1.J9IJ0F Arachis hypogaea HOM05D002552 ORTHO05D002700 7.5e-08 61.6 48 52.1
MBI14_g06364_MAGBIO Magnolia biondii HOM05D002552 ORTHO05D002700 7.5e-08 61.6 75 45.3
Mapoly0106s0038 Marchantia polymorpha HOM05D002552 ORTHO05D002700 7.5e-08 61.6 47 53.2
Nn3g17049 Nelumbo nucifera HOM05D002552 ORTHO05D002700 7.5e-08 61.6 48 50.0
Nitab4.5_0000642g0290 Nicotiana tabacum HOM05D002552 ORTHO05D002700 7.5e-08 61.6 49 51.0
Nitab4.5_0003694g0030 Nicotiana tabacum HOM05D002552 ORTHO05D002700 7.5e-08 61.6 49 51.0
Oeu022180.1 Olea europaea HOM05D002552 ORTHO05D002700 7.5e-08 61.6 51 49.0
Pp3c14_20570 Physcomitrium patens HOM05D002552 ORTHO05D002700 7.5e-08 61.6 52 44.2
Pp3c17_17830 Physcomitrium patens HOM05D002552 ORTHO05D002700 7.5e-08 61.6 52 44.2
Prupe.3G276400 Prunus persica HOM05D002552 ORTHO05D002700 7.5e-08 61.6 64 42.2
Hund09399 Selenicereus undatus HOM05D002552 ORTHO05D002700 7.5e-08 61.6 64 43.8
Solyc04g049840.4 Solanum lycopersicum HOM05D001959 ORTHO05D001955 7.5e-08 61.6 55 50.9
PGSC0003DMG400003412 Solanum tuberosum HOM05D001959 ORTHO05D001955 7.5e-08 61.6 55 50.9
SGA_v2.0_scaffold7G04106 Striga asiatica HOM05D002552 ORTHO05D002700 7.5e-08 61.6 48 52.1
TAR371G0714 Trochodendron aralioides HOM05D000629 ORTHO05D000576 7.5e-08 61.6 64 43.8
ATR0824G171 Amborella trichopoda HOM05D002552 ORTHO05D002700 9.8e-08 61.2 49 49.0
CiPaw.04G021800 Carya illinoinensis HOM05D002552 ORTHO05D002700 9.8e-08 61.2 48 50.0
Cre01.g040500 Chlamydomonas reinhardtii HOM05D002552 ORTHO05D002700 9.8e-08 61.2 45 55.6
MBI15_g23246_MAGBIO Magnolia biondii HOM05D002552 ORTHO05D002700 9.8e-08 61.2 47 51.1
Rhsim12G0160900 Rhododendron simsii HOM05D002552 ORTHO05D002700 9.8e-08 61.2 50 48.0
Sopen04g020110 Solanum pennellii HOM05D001959 ORTHO05D001955 9.8e-08 61.2 54 51.9
GSVIVG01032580001 Vitis vinifera HOM05D002552 ORTHO05D002700 9.8e-08 61.2 73 39.7
arahy.Tifrunner.gnm1.ann1.5IN4WP Arachis hypogaea HOM05D002552 ORTHO05D002700 1.3e-07 60.8 48 52.1
DCAR_026098 Daucus carota HOM05D002552 ORTHO05D002700 1.3e-07 60.8 66 43.9
Dinv13125 Davidia involucrata HOM05D002552 ORTHO05D002700 1.3e-07 60.8 66 40.9
Nitab4.5_0000061g0400 Nicotiana tabacum HOM05D001959 ORTHO05D001955 1.3e-07 60.8 55 49.1
Nitab4.5_0003582g0050 Nicotiana tabacum HOM05D001959 ORTHO05D001955 1.3e-07 60.8 55 49.1
Sabra12G0053000 Salix brachista HOM05D002552 ORTHO05D002700 1.3e-07 60.8 47 53.2
VMungo0464G1861 Vigna mungo HOM05D002552 ORTHO05D002700 1.3e-07 60.8 48 52.1
CDE11G0030 Ceratophyllum demersum HOM05D002552 ORTHO05D002700 1.7e-07 60.5 47 51.1
Nn4g22949 Nelumbo nucifera HOM05D002552 ORTHO05D002700 1.7e-07 60.5 76 39.5
Peaxi162Scf00496g00014 Petunia axillaris HOM05D002552 ORTHO05D002700 1.7e-07 60.5 58 43.1
Pp3c1_29360 Physcomitrium patens HOM05D002552 ORTHO05D002700 1.7e-07 60.5 47 48.9
Pp3c2_12630 Physcomitrium patens HOM05D002552 ORTHO05D002700 1.7e-07 60.5 47 48.9
Hund02704 Selenicereus undatus HOM05D002552 ORTHO05D002700 1.7e-07 60.5 73 42.5
Sc12g0005590 Simmondsia chinensis HOM05D002552 ORTHO05D002700 1.7e-07 60.5 59 44.1
vmacro16581 Vaccinium macrocarpon HOM05D002552 ORTHO05D002700 1.7e-07 60.5 50 48.0
GSVIVG01007838001 Vitis vinifera HOM05D002552 ORTHO05D002700 1.7e-07 60.5 66 42.4
Medtr6g008950 Medicago truncatula HOM05D002552 ORTHO05D002700 2.2e-07 60.1 48 52.1
Peaxi162Scf00208g00068 Petunia axillaris HOM05D001959 ORTHO05D001955 2.2e-07 60.1 55 49.1
Potri.012G074500 Populus trichocarpa HOM05D002552 ORTHO05D002700 2.2e-07 60.1 51 49.0
DCAR_019143 Daucus carota HOM05D001959 ORTHO05D001955 2.9e-07 59.7 82 40.2
Gohir.D04G052100 Gossypium hirsutum HOM05D002552 ORTHO05D002700 2.9e-07 59.7 48 52.1
Gorai.012G058300 Gossypium raimondii HOM05D002552 ORTHO05D002700 2.9e-07 59.7 48 52.1
Ciclev10010976m.g Citrus clementina HOM05D001959 ORTHO05D001955 3.7e-07 59.3 56 50.0
CANSAT80G1172 Cannabis sativa HOM05D002552 ORTHO05D002700 4.9e-07 58.9 74 40.5
Cc04_g16210 Coffea canephora HOM05D002552 ORTHO05D002700 4.9e-07 58.9 66 39.4
TPR.G32603 Trifolium pratense HOM05D002552 ORTHO05D002700 4.9e-07 58.9 48 52.1
Solyc04g009510.4 Solanum lycopersicum HOM05D001959 ORTHO05D001955 6.4e-07 58.5 56 48.2
Sopen04g004670 Solanum pennellii HOM05D001959 ORTHO05D001955 6.4e-07 58.5 56 48.2
PGSC0003DMG400032553 Solanum tuberosum HOM05D001959 ORTHO05D001955 6.4e-07 58.5 56 48.2
PSO478G5096 Papaver somniferum HOM05D002552 ORTHO05D002700 8.3e-07 58.2 56 42.9
PSO591G0332 Papaver somniferum HOM05D002552 ORTHO05D002700 8.3e-07 58.2 56 42.9
EL10Ac2g04645 Beta vulgaris HOM05D002552 ORTHO05D002700 1.1e-06 57.8 48 50.0
CAN.G186.27 Capsicum annuum HOM05D001959 ORTHO05D001955 1.1e-06 57.8 56 48.2
CBR_g35012 Chara braunii HOM05D001959 ORTHO05D002700 1.1e-06 57.8 48 54.2
Ah.02g112830 Amaranthus hybridus HOM05D002552 ORTHO05D002700 1.4e-06 57.4 73 41.1
BcaC02g10972 Brassica carinata HOM05D001959 ORTHO05D001955 1.4e-06 57.4 56 44.6
C04p22770 Brassica napus HOM05D001959 ORTHO05D001955 1.4e-06 57.4 56 44.6
BolC4t23775H Brassica oleracea HOM05D001959 ORTHO05D001955 1.4e-06 57.4 56 44.6
BraA07t29615Z Brassica rapa HOM05D001959 ORTHO05D001955 1.4e-06 57.4 56 44.6
Gohir.A05G362300 Gossypium hirsutum HOM05D002552 ORTHO05D002700 1.4e-06 57.4 48 50.0
Potri.015G069400 Populus trichocarpa HOM05D002552 ORTHO05D002700 1.4e-06 57.4 73 39.7
BcaB01g01080 Brassica carinata HOM05D001959 ORTHO05D001955 1.9e-06 57.0 56 48.2
Hma1.2p1_0786F.1_g217610 Hydrangea macrophylla HOM05D001959 ORTHO05D001955 1.9e-06 57.0 56 44.6
PSO832G1005 Papaver somniferum HOM05D002552 ORTHO05D002700 1.9e-06 57.0 56 42.9
Actinidia38242 Actinidia chinensis HOM05D001959 ORTHO05D001955 2.4e-06 56.6 56 46.4
BcaB02g10169 Brassica carinata HOM05D001959 ORTHO05D001955 2.4e-06 56.6 57 45.6
Dinv02655 Davidia involucrata HOM05D002552 ORTHO05D002700 2.4e-06 56.6 66 40.9
ECA238G1845 Erigeron canadensis HOM05D001959 ORTHO05D001955 2.4e-06 56.6 55 45.5
Lj1A925G63 Lonicera japonica HOM05D001959 ORTHO05D001955 2.4e-06 56.6 56 46.4
Potri.006G132300 Populus trichocarpa HOM05D001959 ORTHO05D001955 2.4e-06 56.6 56 44.6
Sabra15G0093700 Salix brachista HOM05D002552 ORTHO05D002700 2.4e-06 56.6 73 39.7
THA.LOC104810834 Tarenaya hassleriana HOM05D001959 ORTHO05D001955 2.4e-06 56.6 56 42.9
BcaB06g28227 Brassica carinata HOM05D001959 ORTHO05D001955 3.2e-06 56.2 56 44.6
Lj2g0018699 Lotus japonicus HOM05D002552 ORTHO05D002700 4.1e-06 55.8 48 47.9
HanXRQChr11g0323811 Helianthus annuus HOM05D001959 ORTHO05D001955 5.4e-06 55.5 56 48.2
QL07p045416 Quercus lobata HOM05D001959 ORTHO05D001955 5.4e-06 55.5 56 46.4
RcHm_v2.0_Chr3g0468541 Rosa chinensis HOM05D001959 ORTHO05D001955 5.4e-06 55.5 56 48.2
EL10Ac9g22397 Beta vulgaris HOM05D001959 ORTHO05D001955 7.0e-06 55.1 56 42.9
Cc09_g02530 Coffea canephora HOM05D001959 ORTHO05D001955 7.0e-06 55.1 55 45.5
Migut.F02020 Erythranthe guttata HOM05D001959 ORTHO05D001955 7.0e-06 55.1 56 50.0
SGA_v2.0_scaffold329G48841 Striga asiatica HOM05D001959 ORTHO05D001955 7.0e-06 55.1 56 46.4
Aa31LG1G12340 Aethionema arabicum HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 42.9
AL4G23040 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 42.9
AL5G24250 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 42.9
AT3G45630 Arabidopsis thaliana HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 42.9
CiPaw.13G104900 Carya illinoinensis HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 46.4
Lsat_1_v5_gn_8_18061 Lactuca sativa HOM05D001959 ORTHO05D001955 9.2e-06 54.7 55 45.5
Os11g0102800 Oryza sativa ssp. japonica HOM05D001959 ORTHO05D001955 9.2e-06 54.7 55 47.3
Os12g0102400 Oryza sativa ssp. japonica HOM05D001959 ORTHO05D001955 9.2e-06 54.7 55 47.3
PGSC0003DMG400030059 Solanum tuberosum HOM05D001959 ORTHO05D001955 9.2e-06 54.7 56 46.4
Zm00001eb194940 Zea mays HOM05D001959 ORTHO05D001955 9.2e-06 54.7 55 43.6


User provided reference genes

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