Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 8.4e-87 323.9 198 100.0
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 8.4e-87 323.9 198 100.0
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 3.2e-86 322.0 198 99.0
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 5.6e-83 311.2 198 95.5
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 2.4e-81 305.8 198 96.5
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.1e-81 305.4 198 94.4
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 9.3e-78 293.9 199 93.5
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 1.2e-77 293.5 199 93.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 4.6e-77 291.6 199 92.5
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 6.0e-77 291.2 199 93.0
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 6.0e-77 291.2 199 93.0
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.3e-75 285.4 197 88.8
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 4.3e-75 285.0 196 88.8
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 2.1e-74 282.7 196 87.8
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 2.8e-74 282.3 196 88.8
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 9.0e-73 277.3 198 86.9
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 4.3e-59 231.9 198 74.7
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 8.2e-50 201.1 174 75.3
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 2.4e-49 199.5 205 66.8
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 5.3e-49 198.4 134 95.5
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.2e-48 197.2 198 67.7
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 5.9e-48 194.9 202 65.3
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 5.9e-48 194.9 174 74.7
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 7.7e-48 194.5 201 68.2
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.0e-47 194.1 200 66.5
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.0e-47 194.1 174 75.9
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.7e-47 193.4 157 80.3
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.7e-47 193.4 198 66.7
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 2.2e-47 193.0 194 69.1
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 2.2e-47 193.0 174 74.1
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.2e-47 193.0 168 74.4
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 2.2e-47 193.0 168 74.4
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.2e-47 193.0 174 74.7
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 2.9e-47 192.6 202 65.8
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 2.9e-47 192.6 174 73.6
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 2.9e-47 192.6 192 67.2
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 2.9e-47 192.6 206 67.0
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 5.0e-47 191.8 202 66.8
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 5.0e-47 191.8 168 73.8
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 6.5e-47 191.4 200 68.5
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.5e-47 191.4 174 74.1
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 6.5e-47 191.4 188 71.3
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 8.5e-47 191.0 163 76.7
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.4e-46 190.3 205 65.9
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 4.2e-46 188.7 159 78.0
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.5e-46 188.3 95 98.9
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 5.5e-46 188.3 202 65.3
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 5.5e-46 188.3 173 72.3
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 5.5e-46 188.3 188 70.2
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 5.5e-46 188.3 188 70.2
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 7.2e-46 188.0 202 65.8
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.2e-45 187.2 200 68.0
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.6e-45 186.8 158 75.9
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.6e-45 186.8 173 71.7
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 2.1e-45 186.4 200 67.0
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 2.7e-45 186.0 181 71.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.7e-45 186.0 173 71.1
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 7.9e-45 184.5 197 64.0
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 1.0e-44 184.1 202 65.3
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.4e-44 183.7 201 65.2
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.8e-44 183.3 158 74.1
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 3.0e-44 182.6 158 75.3
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 3.9e-44 182.2 200 64.5
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 3.9e-44 182.2 175 70.9
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 5.1e-44 181.8 198 61.1
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 6.7e-44 181.4 198 64.6
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 8.8e-44 181.0 200 63.5
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.1e-43 180.6 150 80.0
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 1.1e-43 180.6 178 69.1
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 1.1e-43 180.6 195 64.1
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.5e-43 180.3 192 67.2
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.5e-43 180.3 200 63.0
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 2.0e-43 179.9 178 68.5
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.0e-43 179.9 154 77.9
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 2.0e-43 179.9 192 65.1
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 2.5e-43 179.5 206 61.2
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.5e-43 179.5 154 76.0
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 4.3e-43 178.7 199 62.8
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 5.7e-43 178.3 174 67.8
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 5.7e-43 178.3 174 68.4
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 1.3e-42 177.2 148 79.7
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.3e-42 177.2 204 61.8
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.2e-42 176.4 151 76.8
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 2.8e-42 176.0 198 62.6
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 2.8e-42 176.0 149 77.9
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 4.8e-42 175.3 202 64.4
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 4.8e-42 175.3 198 64.6
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.4e-41 173.7 192 61.5
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 1.8e-41 173.3 166 69.9
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 4.1e-41 172.2 156 71.8
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 4.1e-41 172.2 173 67.1
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.1e-41 172.2 198 61.1
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.1e-41 172.2 198 61.1
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 6.9e-41 171.4 202 62.4
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 9.1e-41 171.0 149 76.5
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 9.1e-41 171.0 193 62.2
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.5e-40 170.2 179 64.8
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.0e-40 169.9 205 64.4
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 3.4e-40 169.1 147 76.9
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 5.9e-40 168.3 169 67.5
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.0e-39 167.5 156 69.9
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.2e-37 160.6 159 69.2
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 3.0e-36 156.0 170 62.9
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 3.9e-36 155.6 174 63.8
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.4e-33 147.1 174 60.3
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 2.0e-32 143.3 180 59.4
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 2.2e-31 139.8 201 57.7
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 7.2e-30 134.8 158 62.0
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 9.4e-30 134.4 140 71.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.4e-28 130.6 110 77.3
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 3.3e-27 125.9 156 59.6
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.7e-23 113.6 157 55.4
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 6.5e-23 111.7 108 54.6
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.6e-21 107.1 181 50.3
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 8.0e-21 104.8 150 54.0
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 8.8e-20 101.3 157 52.2
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 9.8e-19 97.8 168 48.8
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.3e-18 97.4 110 65.5
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.3e-18 97.4 127 51.2
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.1e-09 67.8 67 49.3
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.2e-08 64.3 111 48.6


User provided reference genes

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