Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 1.3e-210 736.1 374 100.0
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 3.9e-210 734.6 374 99.7
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 4.3e-209 731.1 374 99.5
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 1.1e-204 716.5 374 97.6
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 1.1e-196 689.9 368 96.2
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 1.1e-191 673.3 377 91.2
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 2.3e-186 655.6 368 90.8
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 8.7e-186 653.7 370 90.5
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 8.7e-186 653.7 370 90.3
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 9.0e-175 617.1 371 84.6
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 1.4e-167 593.2 316 93.4
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 4.1e-167 591.7 371 81.1
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 7.2e-148 527.7 370 71.9
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 1.2e-147 526.9 372 71.8
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 1.3e-144 516.9 369 69.9
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 8.2e-144 514.2 374 68.4
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 1.1e-140 503.8 370 68.6
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 3.2e-140 502.3 375 67.7
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 9.4e-140 500.7 369 68.0
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 9.4e-140 500.7 369 68.8
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 1.2e-139 500.4 377 68.2
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 1.6e-139 500.0 369 68.6
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 2.1e-139 499.6 369 68.3
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 2.7e-139 499.2 349 69.6
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 4.7e-139 498.4 367 65.9
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 6.1e-139 498.0 367 67.8
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 6.1e-139 498.0 374 67.9
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 1.0e-138 497.3 369 68.0
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 1.4e-138 496.9 376 66.5
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 1.8e-138 496.5 370 67.8
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 2.3e-138 496.1 369 68.6
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 2.3e-138 496.1 372 68.5
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 3.0e-138 495.7 370 68.4
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 8.8e-138 494.2 369 67.8
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 1.2e-137 493.8 369 66.4
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 2.0e-137 493.0 372 66.7
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 7.5e-137 491.1 369 67.5
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 2.2e-136 489.6 372 66.7
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 2.2e-136 489.6 337 70.0
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 8.3e-136 487.6 370 67.0
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 2.4e-135 486.1 372 67.5
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 3.1e-135 485.7 378 66.7
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 7.0e-135 484.6 344 68.6
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 7.0e-135 484.6 376 66.0
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 2.7e-134 482.6 370 66.2
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 7.7e-134 481.1 381 64.6
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 1.7e-133 479.9 367 65.9
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 1.7e-133 479.9 367 65.9
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 2.9e-133 479.2 318 74.5
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 3.8e-133 478.8 422 60.7
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 6.6e-133 478.0 363 68.6
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 6.6e-133 478.0 398 62.6
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 6.6e-133 478.0 370 64.6
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 1.1e-132 477.2 318 74.2
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 1.1e-132 477.2 371 67.1
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 1.9e-132 476.5 369 66.1
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 3.3e-132 475.7 372 65.9
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 3.3e-132 475.7 310 74.2
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 4.2e-132 475.3 370 64.3
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 9.5e-132 474.2 335 68.1
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 1.2e-131 473.8 369 65.3
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 2.8e-131 472.6 341 67.4
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 2.8e-131 472.6 370 65.1
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 1.0e-130 470.7 370 64.6
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 1.4e-130 470.3 376 64.6
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 3.0e-130 469.2 371 63.3
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 4.0e-130 468.8 371 63.3
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 5.2e-130 468.4 378 64.0
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 5.2e-130 468.4 371 64.2
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 1.2e-129 467.2 374 65.2
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 5.7e-129 464.9 349 67.9
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 4.9e-128 461.8 369 63.7
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 1.2e-126 457.2 374 62.3
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 1.6e-126 456.8 377 64.5
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 2.7e-126 456.1 382 63.4
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 5.9e-126 454.9 355 66.2
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 1.3e-125 453.8 371 63.3
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 2.9e-125 452.6 375 60.8
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 8.6e-125 451.1 340 65.0
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 8.6e-125 451.1 300 73.3
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 1.6e-123 446.8 374 60.2
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 5.2e-122 441.8 330 64.2
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 4.4e-121 438.7 281 74.4
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 2.2e-120 436.4 382 59.9
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 4.9e-120 435.3 285 75.4
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 6.4e-120 434.9 297 71.7
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 9.2e-119 431.0 278 75.9
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 1.8e-114 416.8 352 60.8
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 1.7e-109 400.2 486 48.1
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 3.0e-101 372.9 352 55.1
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 5.6e-100 368.6 246 72.8
HPP92_002355 Vanilla planifolia HOM05D006971 ORTHO05D009076 5.2e-98 362.1 272 65.4
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 2.9e-96 356.3 322 53.7
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 3.2e-95 352.8 370 50.5
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 3.2e-95 352.8 370 50.5
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 1.1e-92 344.4 230 73.9
SMO111G0229 Selaginella moellendorffii HOM05D006971 ORTHO05D009076 4.9e-88 328.9 275 56.7
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 9.3e-87 324.7 247 64.0
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 8.7e-85 318.2 253 62.8
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 4.8e-83 312.4 203 74.9
BcaB03g13848 Brassica carinata HOM05D006971 ORTHO05D009076 2.2e-72 276.9 147 93.2
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 7.7e-57 225.3 224 52.7
Thhalv10019619m.g Eutrema salsugineum HOM05D006971 ORTHO05D009076 7.9e-46 188.7 140 72.9
ClCG04G012280 Citrullus lanatus HOM05D006971 ORTHO05D009076 2.2e-43 180.6 163 55.2
vmacro17545 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 6.5e-40 169.1 164 53.0
Dinv19957 Davidia involucrata HOM05D006971 ORTHO05D009076 1.9e-39 167.5 125 67.2
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 1.6e-38 164.5 168 45.8
Actinidia37630 Actinidia chinensis HOM05D000001 ORTHO05D008780 1.3e-24 118.2 85 70.6
SEGI_28088 Sequoiadendron giganteum HOM05D006971 ORTHO05D009076 3.2e-23 113.6 112 42.9
MD06G1192800 Malus domestica HOM05D006971 ORTHO05D009076 6.3e-19 99.4 84 61.9
HPP92_027582 Vanilla planifolia HOM05D006971 ORTHO05D009076 1.4e-18 98.2 133 45.1
CARHR067920 Cardamine hirsuta HOM05D006971 ORTHO05D116248 3.0e-13 80.5 60 78.3
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 7.0e-10 69.3 55 72.7
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 7.0e-10 69.3 55 72.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.3e-07 59.3 47 61.7
BolC5t30603H Brassica oleracea HOM05D001546 ORTHO05D017197 1.6e-06 58.2 40 80.0


User provided reference genes

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