Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 3.8e-59 231.5 132 100.0
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.5e-42 174.5 102 95.1
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 5.5e-42 174.5 102 94.1
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 5.5e-42 174.5 102 95.1
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 5.5e-42 174.5 102 95.1
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.6e-41 172.9 102 93.1
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 1.0e-35 153.7 102 84.3
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 8.7e-32 140.6 103 78.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.3e-31 138.7 102 72.5
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 5.7e-31 137.9 102 71.6
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 5.7e-31 137.9 102 71.6
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 2.2e-30 136.0 102 77.5
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.1e-29 133.7 102 70.6
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 9.1e-29 130.6 102 69.6
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.2e-28 130.2 115 64.3
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.5e-28 129.8 102 69.6
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.5e-28 129.8 102 68.6
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.5e-28 129.8 102 68.6
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.5e-28 129.8 102 68.6
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.0e-28 129.4 102 68.6
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.6e-28 129.0 102 66.7
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.6e-28 129.0 102 66.7
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 2.6e-28 129.0 102 69.6
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 3.4e-28 128.6 102 68.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 3.4e-28 128.6 102 68.6
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 3.4e-28 128.6 125 59.2
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 7.7e-28 127.5 125 58.4
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.3e-27 126.7 104 70.2
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.3e-27 126.7 102 67.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.3e-27 126.7 102 67.6
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.7e-27 126.3 125 58.4
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.9e-27 125.6 125 57.6
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 2.9e-27 125.6 102 68.6
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.9e-27 125.6 104 68.3
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.9e-27 125.6 111 66.7
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.8e-27 125.2 102 65.7
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 3.8e-27 125.2 125 57.6
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 5.0e-27 124.8 102 68.6
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 5.0e-27 124.8 102 67.6
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 5.0e-27 124.8 102 66.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 6.5e-27 124.4 102 68.6
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 8.5e-27 124.0 102 64.7
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.5e-27 124.0 104 69.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 8.5e-27 124.0 102 67.6
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.1e-26 123.6 102 67.6
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-26 123.2 125 56.8
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-26 123.2 125 56.8
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.4e-26 123.2 125 56.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.4e-26 123.2 102 63.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 3.2e-26 122.1 109 61.5
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 5.5e-26 121.3 125 56.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 5.5e-26 121.3 105 62.9
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 7.2e-26 120.9 102 65.7
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.2e-25 120.2 102 66.7
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.2e-25 120.2 102 64.7
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.2e-25 120.2 102 64.7
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.2e-25 120.2 101 67.3
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.6e-25 119.8 102 65.7
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.1e-25 119.4 102 65.7
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.7e-25 119.0 102 62.7
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 4.7e-25 118.2 113 60.2
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 4.7e-25 118.2 125 53.6
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 7.9e-25 117.5 102 67.6
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.0e-24 117.1 126 56.3
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.0e-24 117.1 125 52.0
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.0e-24 117.1 102 64.7
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.4e-24 116.7 109 58.7
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.4e-24 116.7 125 56.0
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.4e-24 116.7 97 67.0
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.4e-24 116.7 102 62.7
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.4e-24 116.7 102 62.7
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 2.3e-24 115.9 102 60.8
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 3.0e-24 115.5 131 61.8
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 3.0e-24 115.5 131 61.8
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.9e-24 115.2 129 52.7
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 8.8e-24 114.0 102 60.8
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.5e-23 113.2 104 62.5
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.5e-23 113.2 102 59.8
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.5e-23 113.2 102 60.8
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 2.0e-23 112.8 129 51.9
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 2.6e-23 112.5 101 65.3
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 3.3e-23 112.1 125 53.6
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 9.7e-23 110.5 75 84.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 9.7e-23 110.5 101 64.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.3e-22 110.2 113 58.4
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-22 109.8 101 62.4
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-22 109.8 101 62.4
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.7e-22 109.8 116 56.9
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.2e-22 109.4 129 48.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.8e-22 109.0 102 59.8
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.8e-22 109.0 125 52.8
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 4.8e-22 108.2 102 61.8
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 6.3e-22 107.8 102 60.8
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.4e-21 106.7 104 58.7
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.4e-21 105.9 78 74.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.4e-21 105.9 125 53.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.4e-21 105.9 125 53.6
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.4e-21 105.9 125 53.6
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 9.1e-21 104.0 104 58.7
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 5.9e-20 101.3 102 58.8
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 5.9e-20 101.3 102 58.8
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.3e-19 100.1 102 56.9
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 3.8e-19 98.6 103 58.3
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.1e-17 92.8 98 58.2
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.4e-16 90.1 102 54.9
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 5.2e-16 88.2 82 61.0
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 6.7e-16 87.8 101 51.5
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 3.3e-15 85.5 95 58.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 4.4e-15 85.1 102 52.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 7.4e-15 84.3 80 62.5
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.7e-14 83.2 102 52.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.1e-13 79.0 102 49.0
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.6e-12 76.6 101 47.5
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.6e-12 76.6 101 47.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-12 76.3 96 52.1
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.0e-12 76.3 79 55.7
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 7.7e-12 74.3 104 51.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.7e-11 73.2 126 40.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.2e-10 68.9 125 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 2.1e-09 66.2 125 36.0
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 3.0e-08 62.4 86 48.8
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-07 60.5 55 65.5
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.0e-07 59.7 52 57.7
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 7.5e-07 57.8 64 56.2
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 4.8e-06 55.1 121 33.9
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 6.3e-06 54.7 43 79.1
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 6.3e-06 54.7 46 63.0


User provided reference genes

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