Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 1.2e-70 270.4 139 100.0
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.0e-61 240.7 138 92.8
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 4.1e-58 228.8 140 87.1
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.5e-57 226.9 133 89.5
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.5e-57 226.9 133 89.5
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 6.3e-51 204.9 146 82.9
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.0e-45 186.0 139 76.3
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 3.7e-43 179.1 138 76.1
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 7.7e-41 171.4 142 69.7
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.6e-36 156.4 143 63.6
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 4.1e-34 149.1 162 56.2
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 5.5e-31 138.7 144 59.0
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 7.0e-26 121.7 146 54.8
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.1e-18 96.3 157 44.6
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 2.1e-14 83.6 116 44.8
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.2e-12 77.8 132 42.4
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-12 77.4 100 50.0
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.0e-12 77.0 116 45.7
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.0e-12 77.0 149 38.9
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.4e-12 76.3 149 36.2
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.7e-12 75.5 116 44.8
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.7e-12 75.5 132 43.9
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.5e-12 75.1 161 36.0
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 9.8e-12 74.7 154 35.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 9.8e-12 74.7 131 35.1
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.2e-11 73.6 149 34.9
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.2e-11 73.6 160 33.8
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 6.3e-11 72.0 149 34.9
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.8e-10 70.5 148 36.5
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.8e-10 70.5 87 43.7
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.8e-10 70.5 141 32.6
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.4e-10 70.1 141 33.3
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-10 70.1 155 37.4
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.1e-10 69.7 149 37.6
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 3.1e-10 69.7 153 33.3
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.1e-10 69.3 161 35.4
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 4.1e-10 69.3 128 35.9
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 5.4e-10 68.9 136 37.5
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.4e-10 68.9 160 34.4
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 5.4e-10 68.9 91 41.8
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 5.4e-10 68.9 80 46.2
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 5.4e-10 68.9 141 31.9
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 9.2e-10 68.2 147 37.4
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 9.2e-10 68.2 70 51.4
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.6e-09 67.4 142 34.5
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.6e-09 67.4 127 36.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.0e-09 67.0 135 36.3
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.0e-09 67.0 93 45.2
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.7e-09 66.6 141 34.8
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 3.5e-09 66.2 136 39.7
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 3.5e-09 66.2 162 35.2
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.5e-09 66.2 68 50.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.5e-09 65.9 166 36.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 4.5e-09 65.9 146 37.0
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.5e-09 65.9 145 33.1
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 4.5e-09 65.9 135 34.8
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 4.5e-09 65.9 68 50.0
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 5.9e-09 65.5 151 33.1
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 7.8e-09 65.1 141 36.2
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 7.8e-09 65.1 147 35.4
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.8e-09 65.1 155 36.1
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.8e-09 65.1 154 35.7
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.0e-08 64.7 62 51.6
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.0e-08 64.7 151 34.4
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 1.0e-08 64.7 141 34.0
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-08 64.7 155 35.5
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.0e-08 64.7 152 33.6
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.0e-08 64.7 95 45.3
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.3e-08 64.3 85 47.1
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.3e-08 64.3 141 36.2
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-08 64.3 162 34.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.3e-08 64.3 150 34.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.3e-08 64.3 152 35.5
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.7e-08 63.9 150 34.7
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.7e-08 63.9 143 32.9
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.7e-08 63.9 112 31.2
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.7e-08 63.9 162 35.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.7e-08 63.9 72 48.6
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 2.3e-08 63.5 152 34.2
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.3e-08 63.5 149 36.2
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 2.3e-08 63.5 135 35.6
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 2.3e-08 63.5 145 33.1
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.9e-08 63.2 81 42.0
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.9e-08 63.2 81 42.0
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 2.9e-08 63.2 70 45.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 2.9e-08 63.2 160 33.8
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 2.9e-08 63.2 149 33.6
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.8e-08 62.8 149 36.9
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.8e-08 62.8 151 33.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 3.8e-08 62.8 89 38.2
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.8e-08 62.8 81 46.9
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 5.0e-08 62.4 81 44.4
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 5.0e-08 62.4 160 34.4
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.6e-08 62.0 68 50.0
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 6.6e-08 62.0 68 48.5
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 6.6e-08 62.0 68 41.2
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.6e-08 62.0 68 41.2
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 6.6e-08 62.0 142 33.8
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 8.6e-08 61.6 173 32.4
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 8.6e-08 61.6 64 50.0
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 8.6e-08 61.6 126 34.1
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-07 61.2 166 33.7
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.1e-07 61.2 81 40.7
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.1e-07 61.2 81 40.7
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-07 61.2 103 36.9
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 1.5e-07 60.8 68 48.5
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.5e-07 60.8 65 50.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.5e-07 60.8 80 45.0
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.9e-07 60.5 68 39.7
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.9e-07 60.5 160 32.5
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.5e-07 60.1 152 33.6
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.5e-07 60.1 93 39.8
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.5e-07 60.1 81 35.8
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-07 60.1 81 46.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.5e-07 60.1 130 34.6
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 2.5e-07 60.1 68 47.1
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.5e-07 60.1 74 41.9
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 3.3e-07 59.7 75 49.3
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.3e-07 59.7 81 39.5
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.3e-07 59.7 81 39.5
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 3.3e-07 59.7 83 42.2
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 3.3e-07 59.7 158 29.1
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 3.3e-07 59.7 155 32.9
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 4.3e-07 59.3 159 30.2
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 4.3e-07 59.3 68 50.0
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.3e-07 59.3 81 40.7
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.3e-07 59.3 126 34.9
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 4.3e-07 59.3 140 34.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.3e-07 59.3 132 35.6
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 4.3e-07 59.3 83 38.6
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 7.3e-07 58.5 114 35.1
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 7.3e-07 58.5 64 50.0
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 9.5e-07 58.2 140 33.6
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 9.5e-07 58.2 149 35.6
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 9.5e-07 58.2 80 43.8
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 1.6e-06 57.4 146 36.3
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.6e-06 57.4 159 30.8
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.6e-06 57.4 77 42.9
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-06 57.0 64 48.4
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 2.1e-06 57.0 126 29.4
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-06 56.6 106 33.0
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.6e-06 56.2 81 40.7
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 4.7e-06 55.8 75 40.0
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.7e-06 55.8 127 31.5
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 4.7e-06 55.8 137 29.9
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 6.1e-06 55.5 58 36.2
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 6.1e-06 55.5 70 42.9
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 6.1e-06 55.5 135 31.1
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.1e-06 55.5 79 43.0
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 6.1e-06 55.5 69 44.9
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.0e-06 55.1 79 39.2
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.0e-06 55.1 75 44.0
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 8.0e-06 55.1 58 50.0


User provided reference genes

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