Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-138 495.7 254 100.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.4e-74 283.9 289 53.6
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 7.0e-74 281.6 296 53.0
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.2e-73 280.8 294 53.1
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.5e-73 279.3 293 52.9
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.1e-70 270.0 295 51.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 4.7e-70 268.9 295 50.5
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.0e-69 265.8 294 51.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 8.8e-69 264.6 294 49.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.2e-68 264.2 294 51.0
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.7e-68 261.9 294 49.7
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 9.8e-68 261.2 287 51.2
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.7e-67 260.4 294 50.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-64 251.1 295 48.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-64 251.1 295 48.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 5.0e-64 248.8 295 48.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.5e-64 248.4 301 49.5
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.5e-64 248.4 295 48.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 6.5e-64 248.4 295 48.5
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.1e-63 247.7 295 48.5
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.1e-63 247.7 294 48.0
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 7.5e-60 235.0 299 47.5
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 9.8e-60 234.6 296 46.3
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.8e-59 233.0 296 47.6
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 3.7e-59 232.6 258 49.6
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.9e-59 232.3 297 47.5
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.4e-58 229.9 296 46.6
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.4e-58 229.9 298 47.3
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 4.1e-58 229.2 281 47.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 5.4e-58 228.8 290 47.2
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 5.4e-58 228.8 299 46.8
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 5.4e-58 228.8 287 47.4
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 7.0e-58 228.4 248 50.8
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 9.2e-58 228.0 303 44.6
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.7e-57 226.5 296 46.6
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 5.9e-57 225.3 285 45.6
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.8e-57 224.9 298 45.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.3e-56 224.2 302 46.4
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.0e-56 222.2 299 45.2
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.6e-56 221.9 293 44.4
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-55 221.1 294 45.2
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.9e-55 220.3 295 46.4
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.9e-55 220.3 293 45.7
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.3e-55 219.5 291 44.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 4.3e-55 219.2 300 44.7
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 4.3e-55 219.2 294 45.2
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.6e-55 218.8 297 46.1
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.6e-55 218.8 294 45.6
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.3e-55 218.4 294 45.2
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.5e-55 218.0 298 43.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 9.5e-55 218.0 302 45.0
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.6e-54 217.2 310 43.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 2.1e-54 216.9 295 43.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 2.1e-54 216.9 299 44.5
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.0e-53 214.5 294 44.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.0e-53 214.5 294 45.2
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.0e-53 214.5 293 45.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.4e-53 214.2 277 46.6
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.8e-53 213.8 287 46.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.3e-53 213.4 294 44.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.3e-53 213.4 295 43.1
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 3.0e-53 213.0 282 45.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.0e-53 212.6 292 42.8
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.0e-53 212.6 303 44.9
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 5.2e-53 212.2 306 45.1
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 5.2e-53 212.2 307 43.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.2e-53 212.2 305 43.6
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 6.8e-53 211.8 282 45.0
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 6.8e-53 211.8 315 42.9
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 8.9e-53 211.5 292 42.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 8.9e-53 211.5 298 43.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 8.9e-53 211.5 292 44.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.2e-52 211.1 252 47.6
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.6e-52 209.9 306 44.8
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 3.4e-52 209.5 294 44.6
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.4e-52 209.5 298 45.3
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 3.4e-52 209.5 293 44.0
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.4e-52 209.5 296 44.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 3.4e-52 209.5 308 42.9
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 4.4e-52 209.1 279 45.9
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 5.7e-52 208.8 253 47.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 7.5e-52 208.4 307 42.3
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.3e-51 207.6 293 43.7
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.7e-51 207.2 301 44.2
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.2e-51 206.8 270 46.7
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.2e-51 206.8 305 43.3
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.9e-51 206.5 293 45.4
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.9e-51 206.5 288 44.8
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.9e-51 206.5 297 43.4
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 3.7e-51 206.1 301 43.2
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 4.9e-51 205.7 296 43.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.3e-51 204.9 287 44.9
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 8.3e-51 204.9 290 44.8
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 8.3e-51 204.9 288 44.8
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.4e-50 203.4 294 42.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 4.1e-50 202.6 289 43.3
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 4.1e-50 202.6 300 43.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 5.4e-50 202.2 287 43.9
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.2e-49 201.1 291 44.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.2e-49 201.1 296 41.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.6e-49 199.1 308 41.9
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 5.9e-49 198.7 111 94.6
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 5.9e-49 198.7 301 41.9
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.0e-48 198.0 298 43.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.3e-48 197.6 204 52.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.3e-48 196.8 308 41.9
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.3e-48 196.8 284 44.0
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 3.9e-48 196.1 283 43.1
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.9e-48 196.1 255 47.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.6e-48 195.3 289 40.5
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 8.6e-48 194.9 251 47.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.5e-47 194.1 282 42.6
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 7.3e-47 191.8 288 43.4
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 7.3e-47 191.8 297 43.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.2e-46 191.0 299 42.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.1e-46 190.3 317 39.7
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 2.3e-45 186.8 96 95.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.1e-45 186.4 310 42.9
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.1e-45 186.4 201 51.7
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 6.8e-45 185.3 251 47.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.2e-44 184.5 289 41.5
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.3e-43 181.0 197 51.3
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.6e-41 174.1 279 39.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-40 171.0 280 39.6
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.7e-40 170.6 242 39.7
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.1e-39 167.9 279 38.4
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.1e-38 161.8 120 66.7
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.3e-37 160.2 214 44.9
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.0e-36 157.1 236 37.3
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-35 154.5 111 67.6
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.9e-35 153.3 253 35.6
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 3.7e-35 152.9 111 68.5
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 8.3e-35 151.8 202 40.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-34 151.0 125 60.8
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.2e-34 149.8 314 34.4
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.0e-33 145.6 244 41.4
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.2e-28 131.3 120 57.5
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.9e-27 126.7 117 56.4
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 3.0e-24 116.7 119 51.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 5.1e-24 115.9 263 35.0
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.1e-18 98.2 216 35.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.0e-16 91.7 100 48.0
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.2e-14 82.4 48 75.0
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.8e-11 73.2 165 33.3


User provided reference genes

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