Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 3.1e-243 844.7 434 100.0
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 8.7e-230 800.0 434 96.1
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 5.5e-224 780.8 435 93.8
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 9.7e-221 770.0 436 92.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 2.7e-191 672.2 437 81.7
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 5.4e-187 657.9 436 80.5
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 9.5e-184 647.1 436 79.4
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 2.8e-183 645.6 439 78.8
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 3.6e-183 645.2 440 79.3
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.5e-181 639.8 436 78.2
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.2e-175 620.2 443 74.7
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 4.9e-156 555.1 441 69.8
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 6.4e-124 448.4 453 56.3
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 6.0e-122 441.8 476 51.9
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 8.2e-119 431.4 466 53.9
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.1e-118 429.5 466 53.4
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.1e-118 429.5 466 53.4
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 1.5e-117 427.2 469 53.9
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 5.0e-116 422.2 487 51.3
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 8.4e-116 421.4 468 53.2
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 4.2e-115 419.1 459 52.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 7.1e-115 418.3 508 48.0
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 7.1e-115 418.3 462 54.5
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 9.3e-115 417.9 438 53.7
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.6e-114 417.2 463 52.5
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 4.6e-114 415.6 463 52.7
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 7.9e-114 414.8 463 51.4
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.8e-113 413.7 474 51.9
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.8e-113 413.7 455 53.2
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.3e-113 413.3 503 47.9
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 3.9e-113 412.5 463 50.3
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.9e-113 412.5 455 53.0
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-112 410.6 462 51.3
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.5e-112 409.8 455 53.4
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 4.3e-112 409.1 507 48.3
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 5.7e-112 408.7 463 50.1
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 5.7e-112 408.7 459 51.9
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 9.7e-112 407.9 455 52.7
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 1.6e-111 407.1 462 48.9
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 5.3e-110 402.1 461 50.8
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.5e-109 400.6 489 49.9
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 2.6e-109 399.8 506 47.0
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 7.7e-109 398.3 457 50.3
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.0e-108 397.9 507 47.1
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.7e-108 397.1 507 47.3
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.2e-108 396.7 503 48.9
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 6.5e-108 395.2 503 48.7
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.2e-107 392.9 504 47.6
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 5.5e-107 392.1 468 48.5
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 7.2e-107 391.7 442 52.9
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 9.4e-107 391.3 514 46.7
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.6e-106 389.0 466 48.3
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 7.9e-106 388.3 466 50.2
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 6.7e-105 385.2 443 50.3
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.1e-104 384.4 465 50.1
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 7.4e-104 381.7 450 49.8
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 3.1e-102 376.3 467 49.5
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 9.1e-102 374.8 442 48.2
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.5e-101 374.0 503 46.3
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 3.4e-101 372.9 467 46.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 6.5e-100 368.6 455 49.0
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 8.5e-100 368.2 458 48.7
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.5e-99 366.7 483 46.2
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 6.1e-98 362.1 486 45.9
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.4e-97 360.9 476 47.1
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.3e-96 356.3 442 46.6
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.3e-95 354.4 465 46.9
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 4.8e-95 352.4 458 45.9
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 4.8e-95 352.4 458 45.4
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.8e-94 350.5 461 45.8
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.2e-93 347.8 474 45.4
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.2e-93 347.8 467 46.5
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 2.0e-93 347.1 462 45.7
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 4.5e-93 345.9 486 42.8
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 2.9e-92 343.2 408 49.8
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.5e-91 340.9 481 44.5
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.2e-91 339.7 409 50.6
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 5.5e-91 339.0 464 45.7
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 8.8e-89 331.6 469 43.9
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 2.8e-87 326.6 426 47.2
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 2.2e-84 317.0 437 44.9
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.9e-84 316.6 384 50.0
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 2.7e-82 310.1 530 40.4
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.7e-82 310.1 429 45.5
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 2.9e-76 290.0 434 43.3
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.1e-75 288.1 401 45.6
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 1.6e-74 284.3 430 41.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 3.4e-72 276.6 457 37.6
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 1.5e-67 261.2 437 40.3
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.5e-67 261.2 438 40.0
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.6e-64 250.4 337 45.7
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 4.4e-64 249.6 399 40.9
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.7e-60 237.7 381 40.2
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.5e-59 234.6 194 61.9
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 3.3e-59 233.4 342 44.2
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.0e-56 224.2 308 45.1
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.7e-55 219.9 503 32.4
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 4.1e-54 216.5 189 61.4
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.2e-53 214.9 174 61.5
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.1e-51 208.4 545 31.2
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.8e-50 203.8 287 44.6
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 8.9e-49 198.7 228 50.4
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.1e-46 189.9 457 32.6
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 7.1e-46 189.1 244 48.4
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 3.9e-44 183.3 492 28.7
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.1e-42 177.6 210 50.0
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 5.2e-41 172.9 123 68.3
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.5e-37 160.2 265 41.5
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.0e-36 157.1 123 65.0
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 3.6e-34 150.2 197 41.6
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.3e-23 115.2 141 49.6
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 7.1e-22 109.4 69 76.8
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.7e-21 107.5 69 73.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.1e-19 102.1 131 48.9
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.5e-13 80.5 153 32.7
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.5e-11 75.1 48 72.9
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.4e-09 68.6 95 48.4
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.6e-08 64.3 52 61.5
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-07 62.4 76 46.1
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 6.5e-07 59.7 171 31.0


User provided reference genes

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