Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p30570 Brassica napus HOM05D011956 ORTHO05D014041 3.1e-267 924.5 439 100.0
BolC2t09107H Brassica oleracea HOM05D011956 ORTHO05D014041 3.1e-267 924.5 439 100.0
AL5G28140 Arabidopsis lyrata HOM05D011956 ORTHO05D014041 2.8e-135 486.1 479 54.5
Carub.0005s1487 Capsella rubella HOM05D011956 ORTHO05D014041 5.3e-118 428.7 454 52.6
BraA06t25001Z Brassica rapa HOM05D011956 ORTHO05D014041 5.9e-117 425.2 438 52.3
A06p19180 Brassica napus HOM05D011956 ORTHO05D014041 4.2e-115 419.1 438 52.1
CARHR157320 Cardamine hirsuta HOM05D011956 ORTHO05D014041 4.5e-109 399.1 435 51.0
BcaC07g39335 Brassica carinata HOM05D011956 ORTHO05D014041 6.1e-106 388.7 442 49.1
Thhalv10015397m.g Eutrema salsugineum HOM05D011956 ORTHO05D014041 5.0e-100 369.0 296 62.8
C08p23510 Brassica napus HOM05D011956 ORTHO05D014041 8.0e-98 361.7 440 47.0
AT3G15910 Arabidopsis thaliana HOM05D011956 ORTHO05D014041 1.5e-96 357.5 296 60.1
Carub.0003s1565 Capsella rubella HOM05D011956 ORTHO05D014041 7.5e-96 355.1 295 58.6
CARHR157510 Cardamine hirsuta HOM05D011956 ORTHO05D014041 2.3e-92 343.6 277 58.8
Sp5g13480 Schrenkiella parvula HOM05D011956 ORTHO05D014041 8.4e-55 218.8 203 52.2
BolC8t49979H Brassica oleracea HOM05D011956 ORTHO05D014041 5.5e-30 136.3 136 56.6
Sc19g0000590 Simmondsia chinensis HOM05D001729 ORTHO05D001155 1.1e-17 95.5 407 22.4
Ah.07g204710 Amaranthus hybridus HOM05D001729 ORTHO05D001155 4.5e-16 90.1 403 25.1
QL05p014501 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-15 88.2 414 24.6
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 3.8e-15 87.0 450 22.9
Prupe.3G059500 Prunus persica HOM05D001729 ORTHO05D001155 1.1e-14 85.5 463 24.0
MD09G1201600 Malus domestica HOM05D001729 ORTHO05D001155 9.4e-14 82.4 433 24.5
QL05p012608 Quercus lobata HOM05D001729 ORTHO05D001155 9.4e-14 82.4 411 23.4
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 3.6e-13 80.5 441 24.9
QL05p012589 Quercus lobata HOM05D001729 ORTHO05D001155 6.1e-13 79.7 418 23.9
Sabra11G0003700 Salix brachista HOM05D001729 ORTHO05D001155 6.1e-13 79.7 400 26.0
Prupe.6G075500 Prunus persica HOM05D001729 ORTHO05D001155 1.0e-12 79.0 355 23.9
FvH4_3g44471 Fragaria vesca HOM05D001729 ORTHO05D001155 1.4e-12 78.6 268 28.4
Prupe.1G509300 Prunus persica HOM05D001729 ORTHO05D001155 1.4e-12 78.6 248 28.2
AUR62006003 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.8e-12 78.2 411 22.1
FAN16G0249 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.3e-12 77.8 268 28.7
QL05p008212 Quercus lobata HOM05D001729 ORTHO05D001155 2.3e-12 77.8 357 24.6
QL05p052800 Quercus lobata HOM05D001729 ORTHO05D001155 6.7e-12 76.3 464 23.3
RcHm_v2.0_Chr2g0123691 Rosa chinensis HOM05D001729 ORTHO05D001155 1.1e-11 75.5 242 26.0
Prupe.3G246100 Prunus persica HOM05D001729 ORTHO05D001155 1.5e-11 75.1 284 26.1
Atru.chr9.1050 Acer truncatum HOM05D006807 ORTHO05D008528 2.0e-11 74.7 416 25.7
FAN11G1727 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.0e-11 74.7 235 27.2
TWI36G0117 Tripterygium wilfordii HOM05D001729 ORTHO05D001155 2.0e-11 74.7 258 28.7
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 7.5e-11 72.8 328 25.0
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 7.5e-11 72.8 372 23.9
QL05p009518 Quercus lobata HOM05D001729 ORTHO05D001155 9.7e-11 72.4 201 31.8
AUR62035623 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.7e-10 71.6 319 23.8
FAN05G3901 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.2e-10 71.2 274 24.8
FAN16G2506 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.2e-10 71.2 245 26.5
FvH4_3g44510 Fragaria vesca HOM05D001729 ORTHO05D001155 3.7e-10 70.5 245 26.1
FAN11G2672 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.7e-10 70.5 233 27.9
FAN14G0866 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.8e-10 70.1 268 24.6
FAN09G2508 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.3e-10 69.7 272 24.3
FAN14G5781 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-09 68.6 239 25.9
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 1.4e-09 68.6 242 29.8
FAN14G0421 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.8e-09 68.2 224 25.4
Lsat_1_v5_gn_5_38300 Lactuca sativa HOM05D008898 ORTHO05D001155 1.8e-09 68.2 396 25.3
Prupe.1G512600 Prunus persica HOM05D001729 ORTHO05D001155 1.8e-09 68.2 275 26.2
FvH4_6g45291 Fragaria vesca HOM05D001729 ORTHO05D001155 2.4e-09 67.8 224 25.4
QL01p006048 Quercus lobata HOM05D001729 ORTHO05D001155 2.4e-09 67.8 336 24.7
Sabra09G0102700 Salix brachista HOM05D001729 ORTHO05D001155 2.4e-09 67.8 324 25.3
Oeu016027.1 Olea europaea HOM05D007779 ORTHO05D009863 1.2e-08 65.5 407 22.6
FAN02G0583 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.6e-08 65.1 272 24.6
RcHm_v2.0_Chr2g0151111 Rosa chinensis HOM05D001729 ORTHO05D001155 1.6e-08 65.1 275 25.1
FvH4_3g30171 Fragaria vesca HOM05D001729 ORTHO05D001155 2.7e-08 64.3 151 33.8
PGSC0003DMG400005639 Solanum tuberosum HOM05D001729 ORTHO05D001155 2.7e-08 64.3 203 25.6
MD05G1244200 Malus domestica HOM05D001729 ORTHO05D001155 4.5e-08 63.5 158 32.3
QL07p036320 Quercus lobata HOM05D001729 ORTHO05D001155 4.5e-08 63.5 386 24.6
AUR62027174 Chenopodium quinoa HOM05D001729 ORTHO05D001155 5.9e-08 63.2 151 31.1
FAN05G0208 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.0e-07 62.4 258 27.5
QL07p036134 Quercus lobata HOM05D001729 ORTHO05D001155 1.3e-07 62.0 358 25.1
FAN24G2684 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.2e-07 61.2 149 33.6
Prupe.3G265100 Prunus persica HOM05D001729 ORTHO05D001155 2.2e-07 61.2 134 33.6
RcHm_v2.0_Chr2g0163051 Rosa chinensis HOM05D001729 ORTHO05D001155 2.9e-07 60.8 241 25.3
Manes.14G038100 Manihot esculenta HOM05D000664 ORTHO05D000491 3.8e-07 60.5 226 26.5
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 3.8e-07 60.5 280 28.6
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.8e-07 60.5 222 27.5
Sc23g0006800 Simmondsia chinensis HOM05D000664 ORTHO05D000491 5.0e-07 60.1 207 27.1
FAN24G2446 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.5e-07 59.7 143 35.0
Prupe.5G068800 Prunus persica HOM05D001729 ORTHO05D001155 8.5e-07 59.3 133 31.6
FAN05G4861 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.1e-06 58.9 153 30.1
GSVIVG01017506001 Vitis vinifera HOM05D000664 ORTHO05D000491 1.1e-06 58.9 211 28.4
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 1.5e-06 58.5 294 24.8
RcHm_v2.0_Chr3g0457271 Rosa chinensis HOM05D001729 ORTHO05D001155 1.5e-06 58.5 185 28.1
COL.COLO4_30694 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.9e-06 58.2 133 32.3
RcHm_v2.0_Chr6g0276071 Rosa chinensis HOM05D001729 ORTHO05D001155 2.5e-06 57.8 145 32.4
PGSC0003DMG400005638 Solanum tuberosum HOM05D001729 ORTHO05D001155 2.5e-06 57.8 321 25.5
CANSAT80G0415 Cannabis sativa HOM05D001729 ORTHO05D001155 4.2e-06 57.0 282 23.8
FvH4_6g46280 Fragaria vesca HOM05D001729 ORTHO05D001155 4.2e-06 57.0 135 29.6
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 4.2e-06 57.0 366 25.4
RcHm_v2.0_Chr2g0089331 Rosa chinensis HOM05D001729 ORTHO05D001155 5.5e-06 56.6 147 32.7
FAN20G1095 Fragaria x ananassa HOM05D001729 ORTHO05D001155 7.2e-06 56.2 138 33.3
QL05p074214 Quercus lobata HOM05D001729 ORTHO05D001155 9.4e-06 55.8 408 22.8


User provided reference genes

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