Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 4.2e-74 281.2 135 100.0
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 2.3e-56 222.2 105 99.0
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 2.3e-56 222.2 105 99.0
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 3.1e-56 221.9 104 99.0
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 5.8e-55 217.6 104 94.2
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 5.8e-55 217.6 104 96.2
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 9.8e-55 216.9 116 84.5
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 1.3e-54 216.5 104 94.2
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 6.4e-54 214.2 104 92.3
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.6e-52 209.5 105 93.3
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 2.0e-52 209.1 104 92.3
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 6.6e-51 204.1 104 88.5
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 8.1e-41 170.6 104 70.2
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 2.3e-40 169.1 103 69.9
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 2.3e-40 169.1 101 71.3
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 3.1e-40 168.7 103 68.9
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 3.1e-40 168.7 103 69.9
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.2e-39 166.8 101 71.3
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 1.5e-39 166.4 103 69.9
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.5e-39 166.4 106 67.0
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.5e-39 166.4 106 67.0
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 1.5e-39 166.4 115 62.6
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.0e-39 166.0 106 67.9
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 4.4e-39 164.9 103 70.9
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 5.8e-39 164.5 106 63.2
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 5.8e-39 164.5 101 69.3
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 7.6e-39 164.1 106 63.2
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 1.3e-38 163.3 106 66.0
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 2.9e-38 162.2 107 62.6
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 3.8e-38 161.8 101 68.3
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 6.4e-38 161.0 106 62.3
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-37 160.2 106 62.3
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.1e-37 160.2 123 59.3
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.1e-37 160.2 107 65.4
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 1.4e-37 159.8 103 66.0
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.9e-37 159.5 103 67.0
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 1.9e-37 159.5 107 65.4
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.4e-37 159.1 103 63.1
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 2.4e-37 159.1 106 64.2
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 3.2e-37 158.7 102 65.7
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 3.2e-37 158.7 123 58.5
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 3.2e-37 158.7 107 64.5
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 4.1e-37 158.3 103 68.0
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 7.1e-37 157.5 103 64.1
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 1.2e-36 156.8 96 68.8
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 1.2e-36 156.8 106 62.3
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.2e-36 156.8 103 66.0
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 1.2e-36 156.8 106 60.4
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 1.6e-36 156.4 102 63.7
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 1.6e-36 156.4 101 67.3
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 1.6e-36 156.4 106 62.3
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 1.6e-36 156.4 106 60.4
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 2.1e-36 156.0 107 59.8
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 2.7e-36 155.6 106 63.2
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.7e-36 155.6 106 60.4
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 2.7e-36 155.6 109 59.6
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 4.6e-36 154.8 110 61.8
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 4.6e-36 154.8 106 61.3
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 4.6e-36 154.8 106 59.4
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 4.6e-36 154.8 103 64.1
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 6.0e-36 154.5 107 59.8
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 6.0e-36 154.5 109 65.1
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.0e-35 153.7 101 62.4
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 1.0e-35 153.7 103 63.1
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 1.3e-35 153.3 107 60.7
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 1.7e-35 152.9 102 62.7
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 2.3e-35 152.5 101 65.3
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 3.0e-35 152.1 101 61.4
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 3.9e-35 151.8 101 62.4
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 3.9e-35 151.8 106 62.3
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 5.1e-35 151.4 106 58.5
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 6.6e-35 151.0 97 63.9
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 8.6e-35 150.6 101 62.4
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 8.6e-35 150.6 101 61.4
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.9e-34 149.4 100 62.0
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.9e-34 149.4 129 54.3
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 9.6e-34 147.1 100 63.0
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.2e-33 146.7 101 58.4
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 2.1e-33 146.0 104 59.6
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 1.4e-32 143.3 114 56.1
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 2.0e-31 139.4 105 54.3
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 2.6e-31 139.0 79 69.6
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 2.2e-30 136.0 93 63.4
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 2.2e-30 136.0 92 60.9
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 3.8e-30 135.2 101 55.4
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 8.4e-30 134.0 90 67.8
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 1.9e-26 122.9 79 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 7.6e-23 110.9 108 46.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.3e-22 110.2 84 57.1
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 6.4e-22 107.8 109 42.2
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 1.4e-21 106.7 68 75.0
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 9.3e-21 104.0 65 66.2
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 9.3e-21 104.0 73 58.9
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 6.0e-20 101.3 60 76.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 1.9e-18 96.3 48 79.2
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.9e-18 96.3 48 79.2
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 1.1e-16 90.5 115 37.4
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 1.2e-12 77.0 64 53.1
BcaB04g17422 Brassica carinata HOM05D007092 ORTHO05D008947 2.1e-12 76.3 47 76.6
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.0e-11 72.4 113 32.7
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.0e-11 72.4 113 32.7
C03p19630 Brassica napus HOM05D000267 ORTHO05D020178 2.5e-10 69.3 49 69.4
C03p03960 Brassica napus HOM05D000267 ORTHO05D020178 4.3e-10 68.6 49 69.4
BolC3t12933H Brassica oleracea HOM05D000267 ORTHO05D020178 4.3e-10 68.6 49 69.4
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 6.2e-09 64.7 53 50.9
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 6.2e-09 64.7 53 50.9
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 1.5e-07 60.1 32 78.1
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.2e-06 56.2 50 52.0
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 8.4e-06 54.3 43 48.8


User provided reference genes

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