Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 4.7e-185 651.0 312 100.0
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 1.3e-179 632.9 307 98.4
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 2.2e-174 615.5 308 95.8
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 2.2e-174 615.5 308 95.8
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.2e-159 566.6 310 89.0
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.0e-155 553.5 308 86.4
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 8.7e-155 550.4 309 86.7
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 6.2e-153 544.3 308 85.1
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 2.3e-147 525.8 297 85.5
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 2.5e-146 522.3 308 82.8
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 8.1e-137 490.7 311 75.6
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 1.4e-109 400.2 309 66.0
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 7.4e-106 387.9 258 69.8
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 3.7e-105 385.6 266 67.3
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 1.8e-104 383.3 269 67.7
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 1.3e-102 377.1 265 67.5
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 1.7e-102 376.7 272 65.1
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 6.5e-102 374.8 255 68.2
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 2.7e-100 369.4 253 69.2
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 1.0e-99 367.5 272 62.9
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 1.0e-99 367.5 256 66.8
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-99 367.1 251 63.3
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 1.5e-98 363.6 251 62.9
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 2.6e-98 362.8 251 62.9
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 4.4e-98 362.1 300 59.0
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 5.7e-98 361.7 286 58.0
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.3e-97 360.5 251 66.1
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 2.2e-97 359.8 257 65.8
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 6.3e-97 358.2 251 63.3
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 8.2e-97 357.8 304 58.6
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 7.0e-96 354.8 265 63.4
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 1.2e-95 354.0 271 61.3
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.7e-95 352.8 280 59.6
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.5e-95 352.4 250 63.2
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 3.5e-95 352.4 251 64.9
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 4.5e-95 352.1 251 61.4
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 7.7e-95 351.3 302 56.0
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 1.0e-94 350.9 251 64.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 2.2e-94 349.7 249 65.9
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.9e-94 349.4 251 64.5
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 5.0e-94 348.6 269 60.2
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 6.5e-94 348.2 251 63.7
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.1e-93 347.4 278 59.7
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 1.9e-93 346.7 251 60.6
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 3.2e-93 345.9 304 55.9
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 1.2e-92 344.0 293 57.7
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.6e-92 343.6 270 60.0
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 2.7e-92 342.8 267 60.3
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 3.6e-92 342.4 252 60.7
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.4e-91 340.5 249 63.9
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 5.2e-91 338.6 251 61.0
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 6.8e-91 338.2 250 62.4
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 2.6e-90 336.3 298 57.4
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 2.8e-89 332.8 272 59.6
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 4.8e-89 332.0 252 63.9
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 6.3e-89 331.6 258 61.2
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 8.3e-89 331.3 278 57.9
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 4.1e-88 328.9 253 62.5
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 7.0e-88 328.2 298 55.4
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 1.6e-87 327.0 256 60.9
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 1.6e-87 327.0 252 57.5
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.6e-87 327.0 240 63.8
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 2.0e-87 326.6 266 60.9
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 4.5e-87 325.5 240 62.9
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.0e-86 324.3 240 62.5
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 3.2e-85 319.3 256 58.2
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 3.2e-85 319.3 294 54.4
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 5.5e-85 318.5 273 55.3
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 7.2e-85 318.2 296 53.4
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 3.0e-83 312.8 310 50.6
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 7.5e-82 308.1 303 50.8
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 2.2e-81 306.6 252 56.7
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 4.1e-80 302.4 235 59.6
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 2.5e-77 293.1 267 56.2
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.8e-75 287.0 257 54.9
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 2.0e-74 283.5 243 53.9
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 3.2e-72 276.2 204 58.8
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 1.2e-71 274.2 257 54.1
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 4.3e-69 265.8 283 48.4
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 5.6e-69 265.4 256 51.6
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 3.9e-62 242.7 311 43.1
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 6.8e-59 231.9 204 52.9
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 3.7e-57 226.1 227 51.5
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.0e-54 218.0 104 96.2
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 7.3e-53 211.8 250 41.6
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 2.3e-51 206.8 257 42.8
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 7.6e-50 201.8 179 50.8
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 1.3e-46 191.0 186 52.2
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.7e-46 190.7 130 63.1
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 7.3e-45 185.3 256 38.3
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.4e-43 181.0 137 67.2
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.3e-41 174.5 250 38.8
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.3e-38 163.7 106 63.2
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 1.2e-31 141.4 81 69.1
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 6.7e-30 135.6 162 50.0
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 2.6e-26 123.6 282 30.5
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 3.4e-26 123.2 79 63.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 3.5e-23 113.2 84 59.5
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 8.7e-22 108.6 68 73.5
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 2.1e-20 104.0 65 66.2
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 6.2e-20 102.4 60 76.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 9.0e-19 98.6 50 78.0
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 9.0e-19 98.6 50 78.0
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 1.1e-16 91.7 67 65.7
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.3e-14 84.7 71 57.7
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.3e-14 84.7 71 57.7
BcaB04g17422 Brassica carinata HOM05D007092 ORTHO05D008947 4.3e-13 79.7 47 80.9
C03p19630 Brassica napus HOM05D000267 ORTHO05D020178 2.6e-10 70.5 49 69.4
C03p03960 Brassica napus HOM05D000267 ORTHO05D020178 4.5e-10 69.7 49 69.4
BolC3t12933H Brassica oleracea HOM05D000267 ORTHO05D020178 4.5e-10 69.7 49 69.4
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.9e-09 67.0 57 52.6
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-08 65.1 58 48.3
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-08 65.1 58 48.3
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 6.1e-07 59.3 32 75.0
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 7.9e-07 58.9 47 61.7
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.1e-06 56.2 54 48.1
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 5.1e-06 56.2 46 52.2


User provided reference genes

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