Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p29690 Brassica napus HOM05D013915 ORTHO05D011112 3.3e-33 144.4 71 100.0
BcaC02g09316 Brassica carinata HOM05D000186 ORTHO05D011112 6.1e-32 140.2 70 97.1
A04p04930 Brassica napus HOM05D013915 ORTHO05D011112 1.0e-31 139.4 70 95.7
C05p05870 Brassica napus HOM05D013915 ORTHO05D011112 1.0e-31 139.4 70 95.7
BraA04t16207Z Brassica rapa HOM05D001630 ORTHO05D011112 1.0e-31 139.4 70 95.7
C09p44620 Brassica napus HOM05D001630 ORTHO05D011112 4.4e-30 134.0 76 89.5
BolC3t18555H Brassica oleracea HOM05D001630 ORTHO05D011112 5.8e-30 133.7 76 89.5
BolC4t25710H Brassica oleracea HOM05D001630 ORTHO05D011112 5.8e-30 133.7 76 89.5
BolC2t09017H Brassica oleracea HOM05D013915 ORTHO05D011112 7.5e-30 133.3 77 89.6
A08p10600 Brassica napus HOM05D013915 ORTHO05D011112 1.6e-27 125.6 78 83.3
BraA08t33058Z Brassica rapa HOM05D013915 ORTHO05D011112 1.6e-27 125.6 78 83.3
BolC9t57339H Brassica oleracea HOM05D001630 ORTHO05D011112 2.0e-27 125.2 76 84.2
BolC3t16580H Brassica oleracea HOM05D013915 ORTHO05D011112 6.0e-19 97.1 50 94.0
BcaC01g02598 Brassica carinata HOM05D001630 ORTHO05D011112 1.1e-17 92.8 55 87.3
C03p43110 Brassica napus HOM05D013915 ORTHO05D011112 2.1e-16 88.6 61 77.0
BraA03t10631Z Brassica rapa HOM05D001630 ORTHO05D011112 2.1e-16 88.6 49 89.8
BcaC04g20348 Brassica carinata HOM05D001630 ORTHO05D011112 1.8e-15 85.5 55 81.8
BcaB07g31320 Brassica carinata HOM05D001630 ORTHO05D011112 2.3e-15 85.1 55 80.0
A01p22180 Brassica napus HOM05D013915 ORTHO05D011112 6.8e-15 83.6 55 81.8
BcaB05g22201 Brassica carinata HOM05D001630 ORTHO05D011112 1.2e-14 82.8 55 78.2
A02p25840 Brassica napus HOM05D013915 ORTHO05D011112 7.5e-14 80.1 60 73.3
BcaC01g04297 Brassica carinata HOM05D001630 ORTHO05D011112 2.1e-11 72.0 45 80.0
BcaB05g23680 Brassica carinata HOM05D001630 ORTHO05D011112 3.5e-11 71.2 54 72.2
BcaB04g18189 Brassica carinata HOM05D001630 ORTHO05D011112 3.0e-10 68.2 52 69.2
BcaB01g02922 Brassica carinata HOM05D001630 ORTHO05D011112 5.1e-10 67.4 36 91.7
Sabra15G0136700 Salix brachista HOM05D001270 ORTHO05D001099 7.3e-09 63.5 40 70.0
Nn7g38124 Nelumbo nucifera HOM05D001270 ORTHO05D001099 9.5e-09 63.2 40 67.5
TAR626G0550 Trochodendron aralioides HOM05D001270 ORTHO05D001099 1.2e-08 62.8 40 65.0
TAR626G1357 Trochodendron aralioides HOM05D001270 ORTHO05D001099 1.2e-08 62.8 40 65.0
BcaC07g38552 Brassica carinata HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
BcaC07g38554 Brassica carinata HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
C08p13450 Brassica napus HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
BolC8t48975H Brassica oleracea HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
BraA08t35326Z Brassica rapa HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
Carub.0001s0959 Capsella rubella HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
CARHR010280 Cardamine hirsuta HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
Thhalv10006875m.g Eutrema salsugineum HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
Sp1g08810 Schrenkiella parvula HOM05D001270 ORTHO05D001099 1.6e-08 62.4 33 81.8
Psat7g130800 Pisum sativum HOM05D001270 ORTHO05D001099 2.1e-08 62.0 33 78.8
TAR624G1248 Trochodendron aralioides HOM05D001270 ORTHO05D001099 2.1e-08 62.0 40 65.0
AL1G20870 Arabidopsis lyrata HOM05D001270 ORTHO05D001099 2.8e-08 61.6 33 78.8
AT1G10180 Arabidopsis thaliana HOM05D001270 ORTHO05D001099 2.8e-08 61.6 33 78.8
Cpa.g.sc135.33 Carica papaya HOM05D001270 ORTHO05D001099 2.8e-08 61.6 40 65.0
Aa31LG9G16030 Aethionema arabicum HOM05D001270 ORTHO05D001099 3.6e-08 61.2 33 78.8
BolC6t39670H Brassica oleracea HOM05D001630 ORTHO05D002505 3.6e-08 61.2 35 82.9
THA.LOC109116605 Tarenaya hassleriana HOM05D001270 ORTHO05D001099 3.6e-08 61.2 33 78.8
Potri.012G120000 Populus trichocarpa HOM05D001270 ORTHO05D001099 4.7e-08 60.8 40 65.0
Sabra12G0088900 Salix brachista HOM05D001270 ORTHO05D001099 4.7e-08 60.8 40 65.0
arahy.Tifrunner.gnm1.ann1.M2J0L9 Arachis hypogaea HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
arahy.Tifrunner.gnm1.ann1.RB1MXI Arachis hypogaea HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
Ca_18770_v3 Cicer arietinum L. HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
Ciclev10014354m.g Citrus clementina HOM05D001270 ORTHO05D001099 6.2e-08 60.5 40 65.0
Glyma.07G222800 Glycine max HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
Manes.16G059300 Manihot esculenta HOM05D001270 ORTHO05D001099 6.2e-08 60.5 40 65.0
Phvul.002G099100 Phaseolus vulgaris HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
Thecc.06G140100 Theobroma cacao HOM05D001270 ORTHO05D001099 6.2e-08 60.5 40 65.0
TPR.G20981 Trifolium pratense HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
VMungo0251G1176 Vigna mungo HOM05D001270 ORTHO05D001099 6.2e-08 60.5 33 75.8
A08p34140 Brassica napus HOM05D001270 ORTHO05D001099 8.1e-08 60.1 33 78.8
PSO541G2444 Papaver somniferum HOM05D001270 ORTHO05D001099 8.1e-08 60.1 33 75.8
PSO675G8356 Papaver somniferum HOM05D001270 ORTHO05D001099 8.1e-08 60.1 33 75.8
RcHm_v2.0_Chr5g0019861 Rosa chinensis HOM05D001270 ORTHO05D001099 1.1e-07 59.7 33 75.8
CANSAT35G1995 Cannabis sativa HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 75.8
FvH4_3g12130 Fragaria vesca HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 75.8
Glyma.20G021700 Glycine max HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 72.7
MD05G1254700 Malus domestica HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 75.8
MD10G1234800 Malus domestica HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 75.8
Medtr4g083940 Medicago truncatula HOM05D001270 ORTHO05D001099 1.4e-07 59.3 33 72.7
ClCG01G009310 Citrullus lanatus HOM05D001270 ORTHO05D001099 1.8e-07 58.9 33 72.7
Eucgr.E01893 Eucalyptus grandis HOM05D001270 ORTHO05D001099 1.8e-07 58.9 40 62.5
Lalb_Chr05g0219751 Lupinus albus HOM05D001270 ORTHO05D001099 1.8e-07 58.9 33 75.8
MBI18_g24223_MAGBIO Magnolia biondii HOM05D001270 ORTHO05D001099 1.8e-07 58.9 40 62.5
Prupe.4G110000 Prunus persica HOM05D001270 ORTHO05D001099 1.8e-07 58.9 33 75.8
MELO3C021771.2 Cucumis melo HOM05D001270 ORTHO05D001099 2.4e-07 58.5 33 72.7
CsaV3_1G046570 Cucumis sativus L. HOM05D001270 ORTHO05D001099 2.4e-07 58.5 33 72.7
Atru.chr13.2017 Acer truncatum HOM05D001270 ORTHO05D001099 3.1e-07 58.2 33 69.7
Gohir.A06G142333 Gossypium hirsutum HOM05D001270 ORTHO05D001099 3.1e-07 58.2 40 62.5
Gorai.010G168900 Gossypium raimondii HOM05D001270 ORTHO05D001099 3.1e-07 58.2 40 62.5
Lj4g0019362 Lotus japonicus HOM05D001270 ORTHO05D001099 3.1e-07 58.2 33 75.8
TWI63G0037 Tripterygium wilfordii HOM05D001270 ORTHO05D001099 3.1e-07 58.2 41 63.4
Potri.015G118500 Populus trichocarpa HOM05D001270 ORTHO05D001099 4.0e-07 57.8 40 62.5
QL11p018085 Quercus lobata HOM05D001270 ORTHO05D001099 4.0e-07 57.8 33 72.7
BcaB03g14927 Brassica carinata HOM05D001630 ORTHO05D018670 5.2e-07 57.4 40 67.5
Sed0015181 Sechium edule HOM05D001270 ORTHO05D001099 5.2e-07 57.4 33 69.7
EL10Ac4g08648 Beta vulgaris HOM05D001270 ORTHO05D001099 6.8e-07 57.0 40 60.0
Lalb_Chr16g0385291 Lupinus albus HOM05D001270 ORTHO05D001099 6.8e-07 57.0 33 72.7
SHI20907 Sapria himalayana HOM05D000002 ORTHO05D000047 6.8e-07 57.0 33 69.7
Ah.01g014570 Amaranthus hybridus HOM05D001270 ORTHO05D001099 8.9e-07 56.6 40 57.5
BcaC08g46657 Brassica carinata HOM05D001630 ORTHO05D011112 1.2e-06 56.2 35 77.1
C06p46250 Brassica napus HOM05D001630 ORTHO05D002505 1.2e-06 56.2 35 77.1
Duzib192G0897 Durio zibethinus HOM05D001270 ORTHO05D001099 1.2e-06 56.2 40 60.0
Gohir.D06G145200 Gossypium hirsutum HOM05D001270 ORTHO05D001099 1.5e-06 55.8 40 60.0
PGR119G1793 Punica granatum HOM05D001270 ORTHO05D001099 2.0e-06 55.5 33 69.7
Aqoxy1G01475 Aquilegia oxysepala HOM05D001270 ORTHO05D001099 3.4e-06 54.7 31 74.2
Actinidia12731 Actinidia chinensis HOM05D001270 ORTHO05D001099 4.4e-06 54.3 42 59.5
BolC6t39671H Brassica oleracea HOM05D001630 ORTHO05D002505 4.4e-06 54.3 35 74.3
Actinidia22387 Actinidia chinensis HOM05D001270 ORTHO05D001099 5.8e-06 53.9 40 60.0
CSS0038539 Camellia sinensis var. sinensis HOM05D001270 ORTHO05D001099 5.8e-06 53.9 40 60.0
CSS0042607 Camellia sinensis var. sinensis HOM05D001270 ORTHO05D001099 5.8e-06 53.9 40 60.0
HanXRQChr15g0487341 Helianthus annuus HOM05D001270 ORTHO05D001099 5.8e-06 53.9 40 60.0
Cc09_g06340 Coffea canephora HOM05D001270 ORTHO05D001099 7.6e-06 53.5 33 69.7
Hma1.2p1_0040F.1_g025050 Hydrangea macrophylla HOM05D001270 ORTHO05D001099 7.6e-06 53.5 40 60.0
Lsat_1_v5_gn_8_117740 Lactuca sativa HOM05D001270 ORTHO05D001099 7.6e-06 53.5 40 60.0
vmacro03506 Vaccinium macrocarpon HOM05D001270 ORTHO05D001099 7.6e-06 53.5 40 60.0
THA.LOC104823001 Tarenaya hassleriana HOM05D001630 ORTHO05D002505 9.9e-06 53.1 36 72.2


User provided reference genes

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