Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 2.2e-114 415.6 207 100.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-114 415.6 207 100.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 2.2e-114 415.6 207 100.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 5.7e-94 347.8 217 84.3
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 5.7e-94 347.8 217 84.3
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 3.3e-86 322.0 217 78.8
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.0e-83 312.8 223 75.3
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 4.7e-80 301.6 223 73.1
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.8e-77 292.4 228 69.3
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 4.1e-76 288.5 219 71.7
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.2e-73 278.9 226 68.6
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 3.6e-72 275.4 216 69.9
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.1e-72 274.6 221 67.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.4e-71 273.5 216 69.4
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.8e-71 273.1 220 70.5
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.9e-71 271.9 217 70.0
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-70 270.0 219 69.4
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.5e-70 270.0 217 69.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.0e-70 269.6 219 69.4
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 5.7e-70 268.1 222 66.2
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.8e-69 265.8 228 66.2
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.2e-66 256.1 207 69.1
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-54 217.2 212 59.0
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 8.9e-47 191.0 207 57.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 8.6e-42 174.5 224 50.0
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.5e-41 173.7 196 52.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.3e-39 166.4 211 51.2
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 9.2e-36 154.5 211 48.3
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.2e-35 154.1 211 49.8
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.9e-34 149.1 208 48.6
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.3e-33 145.6 209 45.9
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 7.5e-30 134.8 194 45.9
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 5.4e-28 128.6 217 42.9
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.6e-27 127.1 220 42.7
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.1e-27 126.7 179 46.9
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 7.8e-27 124.8 195 40.0
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.3e-26 124.0 219 43.4
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.6e-26 121.7 174 47.1
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 6.6e-26 121.7 187 43.3
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.9e-25 120.2 202 42.1
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.5e-25 119.8 184 45.7
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.3e-25 118.2 204 43.1
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 7.3e-25 118.2 211 39.8
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-24 117.5 216 40.3
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.6e-24 117.1 226 39.8
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.8e-23 113.6 201 43.3
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.8e-23 113.6 221 41.6
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.3e-23 113.2 204 41.2
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 3.1e-23 112.8 183 41.5
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 3.1e-23 112.8 146 42.5
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.1e-23 112.8 193 43.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.1e-23 112.8 208 41.8
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 8.9e-23 111.3 175 44.6
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 8.9e-23 111.3 225 40.9
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.2e-22 110.9 163 44.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-22 110.9 205 38.0
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.5e-22 110.5 175 43.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 2.0e-22 110.2 237 38.4
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.0e-22 110.2 178 41.0
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.0e-22 110.2 221 43.0
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 7.5e-22 108.2 172 43.6
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.5e-22 108.2 150 43.3
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.5e-22 108.2 158 43.0
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.9e-22 107.8 173 40.5
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 9.9e-22 107.8 181 39.8
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.3e-21 107.5 214 40.2
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.9e-21 106.3 219 37.9
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.7e-21 105.9 186 43.5
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 3.7e-21 105.9 191 37.2
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.7e-21 105.9 184 39.1
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.9e-21 105.5 158 43.0
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 6.4e-21 105.1 185 41.1
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.1e-20 104.4 169 41.4
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.4e-20 104.0 176 43.2
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.4e-20 104.0 218 38.5
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 3.2e-20 102.8 207 36.2
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 5.4e-20 102.1 167 41.3
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 7.1e-20 101.7 187 39.6
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 9.2e-20 101.3 169 39.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 9.2e-20 101.3 184 42.4
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 9.2e-20 101.3 166 42.8
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-19 100.9 208 37.5
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.2e-19 100.9 208 37.5
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.6e-19 100.5 173 41.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.7e-19 99.8 161 38.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.7e-19 99.8 202 40.1
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.5e-19 99.4 181 41.4
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 4.6e-19 99.0 136 44.9
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 6.6e-18 95.1 207 38.6
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 8.6e-18 94.7 168 41.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 8.6e-18 94.7 175 38.3
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 8.6e-18 94.7 176 38.1
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.1e-17 94.4 192 41.1
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-17 94.4 215 38.1
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.5e-17 94.0 145 40.0
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 2.5e-17 93.2 188 38.8
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 3.3e-17 92.8 177 37.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.3e-17 92.8 192 36.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 4.3e-17 92.4 152 37.5
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 5.6e-17 92.0 173 39.9
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 7.3e-17 91.7 165 40.6
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 7.3e-17 91.7 168 39.3
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.2e-16 90.9 165 38.8
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-16 90.9 203 36.9
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.6e-16 90.5 155 34.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.1e-16 90.1 166 39.2
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.1e-16 90.1 168 38.7
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.7e-16 89.0 191 36.6
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.7e-16 89.0 191 37.2
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.1e-15 87.8 170 35.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.1e-15 86.3 194 37.1
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 3.1e-15 86.3 180 35.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.2e-15 85.5 175 38.3
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 6.8e-15 85.1 161 34.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.8e-15 85.1 191 36.1
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-14 84.3 213 35.7
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.5e-14 84.0 224 35.3
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 2.2e-13 80.1 137 42.3
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.9e-13 79.0 176 37.5
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.1e-12 77.8 185 33.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.1e-12 77.8 166 36.7
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.1e-12 75.1 151 40.4
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 9.2e-12 74.7 184 39.7
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.5e-11 72.8 155 35.5
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.0e-10 71.2 131 42.0
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.3e-10 70.9 166 38.0
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.3e-10 70.9 161 32.9
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.7e-10 70.5 184 33.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.7e-10 70.5 208 32.2
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.9e-10 69.3 180 36.7
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 5.1e-10 68.9 188 35.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.6e-10 68.6 118 38.1
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.5e-09 66.6 172 34.3
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 5.6e-09 65.5 183 31.7
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 9.6e-09 64.7 204 31.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-08 64.3 172 32.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.6e-08 62.8 137 37.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 4.4e-06 55.8 136 39.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 7.6e-06 55.1 191 34.6


User provided reference genes

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