Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 2.8e-304 1047.7 506 100.0
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 3.6e-291 1004.2 506 96.6
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 8.2e-288 993.0 506 95.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 3.1e-279 964.5 506 92.7
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 5.0e-261 904.0 506 86.4
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.4e-258 896.0 509 86.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 4.4e-257 891.0 509 85.1
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 4.2e-252 874.4 509 83.9
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.5e-246 854.7 507 81.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.1e-230 802.4 441 88.0
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.4e-209 731.9 418 84.4
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 5.5e-191 671.4 501 65.5
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.5e-185 653.3 501 64.3
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 6.5e-184 647.9 466 67.0
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.7e-182 642.5 459 68.0
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 3.5e-182 642.1 496 62.7
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.5e-182 642.1 510 62.9
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 4.6e-182 641.7 510 62.7
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 7.9e-182 641.0 495 63.2
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.3e-181 639.4 484 65.7
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 8.7e-181 637.5 495 62.6
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.5e-180 636.7 507 62.7
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.3e-179 633.6 544 58.8
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.8e-179 632.5 508 62.4
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 3.7e-179 632.1 443 68.2
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.1e-178 630.6 524 60.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 2.4e-178 629.4 497 63.4
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.0e-176 624.0 446 67.0
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.7e-176 623.2 508 60.0
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 2.2e-176 622.9 435 68.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.2e-176 622.9 500 61.4
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 8.5e-176 620.9 472 63.3
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.4e-175 620.2 503 62.8
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.2e-175 619.0 510 59.8
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 4.2e-175 618.6 503 60.6
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 5.5e-175 618.2 509 59.5
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 7.9e-174 614.4 502 60.4
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.0e-173 614.0 471 62.6
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.4e-173 613.6 504 59.3
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.4e-173 613.6 507 60.4
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.8e-173 613.2 471 63.5
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 8.8e-173 610.9 560 57.0
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.1e-172 610.5 497 61.0
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 3.3e-172 609.0 507 60.4
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 4.3e-172 608.6 456 63.6
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 5.7e-172 608.2 487 61.8
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.7e-171 605.5 501 58.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 4.1e-170 602.1 517 58.4
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 4.1e-170 602.1 463 63.3
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.2e-169 600.5 490 61.4
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 2.0e-169 599.7 467 61.9
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.6e-169 599.4 484 61.4
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.6e-169 599.4 479 61.4
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 5.9e-169 598.2 468 62.6
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 7.7e-169 597.8 490 61.4
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.0e-168 597.4 505 59.6
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.3e-168 597.0 497 59.6
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.7e-168 596.7 500 58.6
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 8.5e-168 594.3 502 58.8
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 4.2e-167 592.0 486 60.3
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 9.4e-167 590.9 487 59.8
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.2e-166 590.5 492 58.9
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 6.1e-166 588.2 494 57.7
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 6.1e-166 588.2 501 59.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.4e-165 587.0 507 58.2
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 5.7e-164 581.6 497 57.3
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.3e-163 580.5 483 60.2
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.8e-162 576.6 475 59.4
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.6e-161 572.8 511 57.5
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.1e-159 567.4 394 67.5
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.0e-157 560.8 411 64.7
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.0e-157 560.8 503 56.1
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.4e-157 560.5 441 61.5
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.8e-157 560.1 499 56.5
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.5e-156 557.0 403 66.5
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 9.7e-156 554.3 421 63.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.3e-155 553.9 524 53.6
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.8e-155 552.7 418 62.4
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.7e-153 544.7 514 55.8
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.5e-151 540.4 453 59.6
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.6e-150 535.8 474 55.9
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.0e-149 532.7 416 61.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 8.3e-147 524.6 411 61.1
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 4.1e-146 522.3 405 61.7
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.5e-145 518.8 490 54.7
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.4e-141 507.3 357 67.5
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 4.0e-141 505.8 243 100.0
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 2.2e-139 500.0 504 53.0
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.8e-139 499.6 514 53.5
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 9.2e-138 494.6 243 97.5
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.3e-136 490.7 238 100.0
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 3.6e-134 482.6 523 50.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.0e-132 476.9 325 67.1
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 6.4e-131 471.9 376 60.9
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.1e-130 471.1 414 58.7
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.4e-130 468.8 550 48.4
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 5.4e-130 468.8 441 54.2
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 3.0e-128 463.0 343 64.7
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 6.2e-126 455.3 377 56.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 5.2e-125 452.2 238 93.3
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 9.2e-122 441.4 443 48.3
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.5e-119 433.3 361 59.0
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.4e-117 427.6 393 57.0
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.8e-117 427.2 350 56.0
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 4.4e-108 396.0 268 70.9
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 4.8e-94 349.4 246 69.1
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.4e-93 347.1 246 68.7
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.4e-90 337.0 386 46.1
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.3e-87 326.2 345 49.9
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 5.6e-87 325.9 365 43.8
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.1e-82 311.6 178 77.5
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.7e-81 307.0 254 59.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.7e-81 307.0 254 59.1
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.8e-80 304.3 247 59.1
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.3e-67 261.5 401 36.7
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 3.1e-61 240.4 343 39.1
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.8e-56 224.6 191 58.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.4e-53 214.2 158 63.9
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.0e-51 208.8 213 51.2
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.1e-42 178.7 108 71.3
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 5.3e-37 159.8 304 34.5
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.9e-36 156.4 104 63.5
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.3e-32 144.4 339 31.6
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 5.7e-31 139.8 74 81.1
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 3.5e-28 130.6 73 78.1
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 6.3e-22 109.8 55 83.6
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.3e-19 102.1 384 25.5
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 7.3e-18 96.3 143 38.5
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 2.3e-11 74.7 97 44.3
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 6.8e-08 63.2 87 41.4


User provided reference genes

Program Settings