Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.5e-73 279.3 128 100.0
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-73 279.3 128 100.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-59 232.6 150 76.7
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 1.4e-58 229.6 107 97.2
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.5e-57 226.1 107 95.3
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-57 226.1 107 96.3
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-57 224.6 107 95.3
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.1e-55 219.9 102 97.1
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 7.9e-54 213.8 107 89.7
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.0e-53 213.4 107 89.7
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.0e-53 213.4 107 89.7
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.3e-53 212.2 107 88.8
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.3e-53 212.2 107 88.8
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.0e-53 211.8 107 88.8
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 6.7e-53 210.7 107 87.9
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 6.7e-53 210.7 107 87.9
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 8.7e-53 210.3 107 86.0
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 8.7e-53 210.3 107 87.9
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 8.7e-53 210.3 107 85.0
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 87.9
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-52 209.9 112 82.1
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.1e-52 209.9 107 86.9
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 1.5e-52 209.5 107 87.9
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.9e-52 209.1 107 86.9
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.9e-52 209.1 107 86.9
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 2.5e-52 208.8 107 87.9
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 2.5e-52 208.8 107 87.9
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.5e-52 208.8 107 87.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 3.3e-52 208.4 107 86.9
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 87.9
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 86.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 86.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 86.9
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 86.0
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 86.0
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 4.3e-52 208.0 107 87.9
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 5.7e-52 207.6 107 86.9
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 9.6e-52 206.8 107 86.0
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 9.6e-52 206.8 107 86.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 9.6e-52 206.8 107 86.0
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.3e-51 206.5 108 86.1
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.3e-51 206.5 106 86.8
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.6e-51 206.1 107 84.1
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.1e-51 205.7 107 86.9
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 3.7e-51 204.9 107 83.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 8.2e-51 203.8 107 83.2
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.4e-50 203.0 107 81.3
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.4e-50 202.2 107 85.0
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 3.1e-50 201.8 107 84.1
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.0e-49 199.1 107 82.2
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 3.4e-49 198.4 107 82.2
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.4e-49 198.4 107 85.0
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 5.8e-49 197.6 102 87.3
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-48 196.1 100 88.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-48 196.1 100 88.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-48 196.1 100 88.0
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 6.5e-48 194.1 97 91.8
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 6.5e-48 194.1 107 81.3
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.5e-48 194.1 101 86.1
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.9e-47 192.6 107 85.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 3.2e-47 191.8 105 83.8
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 4.2e-47 191.4 106 80.2
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-46 189.9 107 81.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.7e-46 188.7 119 73.1
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.9e-45 184.9 100 83.0
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 5.1e-45 184.5 107 81.3
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.3e-43 179.9 107 76.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.3e-43 179.9 107 78.5
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.2e-43 179.1 107 80.4
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.2e-43 179.1 107 75.7
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.8e-43 178.7 90 88.9
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.3e-43 177.6 92 84.8
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.4e-42 176.4 117 71.8
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.3e-42 174.5 91 86.8
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-39 166.4 111 73.9
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.0e-37 160.2 107 72.0
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.4e-34 149.1 107 68.2
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.0e-33 146.0 107 64.5
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.0e-33 146.0 107 64.5
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.0e-33 146.0 107 64.5
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 5.9e-33 144.4 81 82.7
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 5.9e-33 144.4 84 77.4
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 3.2e-31 138.7 78 79.5
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.6e-30 136.3 79 74.7
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 6.1e-30 134.4 78 79.5
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 1.0e-29 133.7 107 62.6
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.9e-29 131.7 99 65.7
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.6e-28 129.0 69 85.5
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.4e-28 128.3 80 72.5
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.4e-26 122.5 88 71.6
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-26 120.6 65 84.6
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.5e-25 119.8 64 82.8
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 4.5e-25 118.2 109 58.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.0e-24 117.1 85 64.7
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.5e-24 114.4 62 80.6
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 6.7e-21 104.4 62 79.0
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 8.8e-21 104.0 66 72.7
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-20 102.4 58 84.5
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-20 102.4 54 83.3
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 5.7e-20 101.3 79 58.2
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.7e-20 101.3 69 66.7
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.3e-19 100.1 78 64.1
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 3.7e-19 98.6 43 100.0
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 3.7e-19 98.6 52 82.7
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.6e-17 93.2 51 82.4
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 2.0e-17 92.8 53 75.5
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.7e-16 89.7 86 48.8
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.6e-14 83.2 56 67.9
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.1e-14 82.8 45 84.4
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 4.7e-14 81.6 43 83.7
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.5e-12 76.6 49 73.5
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-12 75.9 37 91.9
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.8e-10 69.7 40 80.0
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.0e-09 66.2 32 84.4
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.3e-08 63.5 32 87.5
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 2.2e-08 62.8 34 79.4
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 6.5e-08 61.2 32 84.4
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.1e-07 60.5 31 80.6
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.1e-07 60.5 31 80.6
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.9e-07 59.7 31 83.9
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.9e-07 59.7 31 87.1
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.9e-07 59.7 31 87.1
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.5e-07 59.3 31 80.6
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 4.2e-07 58.5 91 30.8
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 5.5e-07 58.2 30 86.7
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.6e-06 56.6 88 30.7
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 1.6e-06 56.6 31 77.4
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 3.6e-06 55.5 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 6.1e-06 54.7 27 88.9
BolSC35t60757H Brassica oleracea HOM05D001033 ORTHO05D004888 8.0e-06 54.3 23 100.0


User provided reference genes

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