Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 8.5e-87 323.6 154 100.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 8.5e-87 323.6 154 100.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.9e-26 122.5 99 64.6
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.8e-26 122.1 99 64.6
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 8.4e-26 120.9 99 63.6
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 8.4e-26 120.9 100 63.0
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 8.4e-26 120.9 99 63.6
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.2e-25 119.0 99 62.6
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.2e-25 118.6 99 61.6
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 4.2e-25 118.6 99 60.6
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 5.4e-25 118.2 99 61.6
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.1e-25 117.9 99 60.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 7.1e-25 117.9 99 61.6
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 7.1e-25 117.9 99 61.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 7.1e-25 117.9 99 60.6
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.2e-24 117.1 99 59.6
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 61.6
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 59.6
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 59.6
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 59.6
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 59.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 60.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.6e-24 116.7 99 60.6
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.1e-24 116.3 99 60.6
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.7e-24 115.9 99 59.6
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.6e-24 115.2 99 59.6
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.6e-24 115.2 99 59.6
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 6.0e-24 114.8 99 58.6
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 6.0e-24 114.8 110 56.4
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 6.0e-24 114.8 100 59.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.0e-23 114.0 99 57.6
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.0e-23 114.0 99 59.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.3e-23 113.6 99 59.6
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-23 113.6 99 59.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-23 113.2 99 58.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-23 113.2 99 58.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-23 113.2 99 58.6
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-23 112.8 99 57.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-23 112.8 99 58.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 2.3e-23 112.8 99 57.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.0e-23 112.5 99 58.6
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.0e-23 112.5 99 57.6
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 3.9e-23 112.1 99 58.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.9e-23 112.1 99 58.6
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 3.9e-23 112.1 99 58.6
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 3.9e-23 112.1 99 57.6
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 5.1e-23 111.7 100 57.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 6.6e-23 111.3 99 57.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.6e-23 111.3 99 59.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 6.6e-23 111.3 99 59.6
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 6.6e-23 111.3 99 56.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 6.6e-23 111.3 99 56.6
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.7e-23 110.9 99 56.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.7e-23 110.9 99 56.6
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 8.7e-23 110.9 100 57.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.7e-23 110.9 105 57.1
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.1e-22 110.5 103 54.4
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.1e-22 110.5 100 57.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.1e-22 110.5 100 59.0
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-22 110.5 99 55.6
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-22 110.5 99 55.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.5e-22 110.2 99 57.6
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.5e-22 110.2 99 56.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.5e-22 110.2 99 56.6
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.5e-22 110.2 99 56.6
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.9e-22 109.8 100 57.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.9e-22 109.8 98 58.2
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.9e-22 109.8 99 55.6
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.9e-22 109.8 99 56.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.9e-22 109.8 100 57.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.5e-22 109.4 99 54.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.5e-22 109.4 99 55.6
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.5e-22 109.4 99 55.6
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.5e-22 109.4 99 56.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.5e-22 109.4 99 55.6
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.3e-22 109.0 100 56.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.3e-22 109.0 99 55.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.3e-22 109.0 99 56.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 3.3e-22 109.0 98 57.1
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.3e-22 109.0 99 56.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.3e-22 109.0 99 55.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.3e-22 109.0 100 55.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 3.3e-22 109.0 104 52.9
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.3e-22 108.6 99 54.5
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 5.6e-22 108.2 99 57.6
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 5.6e-22 108.2 99 55.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.6e-22 108.2 99 54.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 7.3e-22 107.8 99 55.6
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 7.3e-22 107.8 99 55.6
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.3e-22 107.8 100 55.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 7.3e-22 107.8 99 54.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 7.3e-22 107.8 99 54.5
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 7.3e-22 107.8 99 53.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 9.6e-22 107.5 100 58.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 9.6e-22 107.5 99 54.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.3e-21 107.1 99 54.5
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.3e-21 107.1 99 54.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.3e-21 107.1 99 54.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.3e-21 107.1 99 56.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.3e-21 107.1 103 54.4
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.3e-21 107.1 99 56.6
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-21 107.1 100 56.0
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.6e-21 106.7 99 55.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.6e-21 106.7 99 55.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.6e-21 106.7 104 51.0
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.1e-21 106.3 99 54.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.1e-21 106.3 99 51.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.1e-21 106.3 99 54.5
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.1e-21 106.3 99 53.5
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.1e-21 106.3 99 53.5
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 2.8e-21 105.9 99 55.6
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.8e-21 105.9 99 53.5
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.8e-21 105.9 99 52.5
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.6e-21 105.5 100 55.0
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.8e-21 105.1 99 53.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 6.2e-21 104.8 100 56.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 6.2e-21 104.8 99 55.6
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 6.2e-21 104.8 99 52.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 8.1e-21 104.4 99 52.5
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 8.1e-21 104.4 103 52.4
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.1e-20 104.0 68 73.5
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-20 104.0 103 50.5
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.4e-20 103.6 99 51.5
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.4e-20 102.8 102 51.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.4e-20 102.8 100 52.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.3e-20 101.7 99 51.5
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.2e-19 100.5 99 51.5
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 5.8e-19 98.2 110 50.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 7.6e-19 97.8 99 51.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 7.6e-19 97.8 99 51.5
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 7.1e-17 91.3 103 47.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.0e-15 87.4 144 38.9
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.3e-13 80.5 101 40.6
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.9e-12 74.7 106 38.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.2e-10 69.7 68 41.2
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.8e-10 68.9 81 39.5
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 6.4e-10 68.2 58 55.2
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-06 56.6 67 50.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-06 56.6 67 50.7


User provided reference genes

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