Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 6.8e-57 224.2 149 98.0
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 6.8e-57 224.2 149 100.0
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 1.3e-55 219.9 148 89.9
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 1.3e-55 219.9 148 89.9
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.7e-55 219.5 149 89.9
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 8.1e-42 174.1 122 84.4
BcaB05g24574 Brassica carinata HOM05D008527 ORTHO05D010701 2.0e-40 169.5 120 86.7
Thhalv10019272m.g Eutrema salsugineum HOM05D008527 ORTHO05D010701 4.9e-39 164.9 118 84.7
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 1.3e-36 156.8 126 80.2
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 1.3e-36 156.8 126 80.2
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 1.3e-36 156.8 126 80.2
BcaB05g24577 Brassica carinata HOM05D008527 ORTHO05D010701 9.5e-35 150.6 81 95.1
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 8.1e-34 147.5 124 69.4
A07p36840 Brassica napus HOM05D008527 ORTHO05D010701 1.2e-32 143.7 85 87.1
AL2G29840 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 7.6e-32 141.0 122 73.8
A07p31080 Brassica napus HOM05D008527 ORTHO05D010701 6.4e-31 137.9 126 75.4
BraA07t30743Z Brassica rapa HOM05D008527 ORTHO05D010701 6.4e-31 137.9 126 75.4
BraA07t31250Z Brassica rapa HOM05D008527 ORTHO05D010701 2.1e-26 122.9 123 70.7
BcaB03g14805 Brassica carinata HOM05D008527 ORTHO05D010701 4.7e-26 121.7 123 70.7
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 6.9e-25 117.9 122 57.4
AT1G70470 Arabidopsis thaliana HOM05D008527 ORTHO05D010701 1.3e-23 113.6 69 85.5
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 2.1e-21 106.3 86 69.8
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 3.0e-20 102.4 127 51.2
Aa31LG7G7580 Aethionema arabicum HOM05D008527 ORTHO05D010701 1.1e-19 100.5 106 67.0
CARHR063630 Cardamine hirsuta HOM05D008527 ORTHO05D010701 1.4e-17 93.6 70 74.3
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 5.3e-17 91.7 128 58.6
Sp1g20970 Schrenkiella parvula HOM05D008527 ORTHO05D010701 9.0e-17 90.9 104 55.8
BcaB03g11943 Brassica carinata HOM05D008527 ORTHO05D010701 2.6e-16 89.4 104 53.8
BcaB03g11945 Brassica carinata HOM05D008527 ORTHO05D010701 2.6e-16 89.4 104 53.8
A08p28140 Brassica napus HOM05D008527 ORTHO05D010701 3.4e-16 89.0 103 55.3
BraA08t34747Z Brassica rapa HOM05D008527 ORTHO05D010701 3.4e-16 89.0 103 55.3
BcaC06g35042 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-14 83.6 102 54.9
A07p13850 Brassica napus HOM05D008527 ORTHO05D010701 1.4e-14 83.6 102 54.9
BolC7t42561H Brassica oleracea HOM05D008527 ORTHO05D010701 1.4e-14 83.6 102 54.9
BraA07t29139Z Brassica rapa HOM05D008527 ORTHO05D010701 5.4e-14 81.6 160 42.5
C07p20400 Brassica napus HOM05D008527 ORTHO05D010701 1.2e-13 80.5 102 53.9
BcaB03g14145 Brassica carinata HOM05D008527 ORTHO05D010701 2.1e-13 79.7 66 66.7
BcaC07g39203 Brassica carinata HOM05D008527 ORTHO05D010701 2.1e-13 79.7 103 52.4
C08p21950 Brassica napus HOM05D008527 ORTHO05D010701 2.1e-13 79.7 103 52.4
BolC8t49831H Brassica oleracea HOM05D008527 ORTHO05D010701 2.1e-13 79.7 103 52.4
BolC5t30985H Brassica oleracea HOM05D008527 ORTHO05D010701 3.5e-13 79.0 128 55.5
BcaC05g26275 Brassica carinata HOM05D008527 ORTHO05D010701 7.9e-13 77.8 128 54.7
C05p22860 Brassica napus HOM05D008527 ORTHO05D010701 7.9e-13 77.8 128 54.7
A09p41140 Brassica napus HOM05D008527 ORTHO05D010701 1.3e-12 77.0 130 53.8
BraA09t39607Z Brassica rapa HOM05D008527 ORTHO05D010701 1.3e-12 77.0 130 53.8
THA.LOC104824704 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 2.3e-12 76.3 154 39.6
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 2.4e-09 66.2 113 39.8
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 4.0e-09 65.5 94 43.6
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 4.0e-09 65.5 113 38.1
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 9.0e-09 64.3 113 38.1
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 4.5e-08 62.0 118 38.1
CARHR023970 Cardamine hirsuta HOM05D008527 ORTHO05D010701 9.9e-08 60.8 128 39.1
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 9.9e-08 60.8 119 38.7
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 1.3e-07 60.5 101 43.6
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 2.2e-07 59.7 118 37.3
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 2.9e-07 59.3 109 40.4
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.9e-07 59.3 102 40.2
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.9e-07 59.3 102 40.2
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.9e-07 59.3 102 40.2
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 4.9e-07 58.5 91 45.1
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 4.9e-07 58.5 109 37.6
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 4.9e-07 58.5 108 38.9
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 4.9e-07 58.5 114 36.0
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 6.4e-07 58.2 89 41.6
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.4e-07 58.2 94 41.5
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 6.4e-07 58.2 86 44.2
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 1.1e-06 57.4 120 49.2
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.1e-06 57.4 109 37.6
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 1.1e-06 57.4 109 37.6
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 1.1e-06 57.4 118 37.3
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 1.4e-06 57.0 91 42.9
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 1.9e-06 56.6 87 40.2
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.9e-06 56.6 108 38.9
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.9e-06 56.6 118 35.6
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 2.4e-06 56.2 94 40.4
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 3.2e-06 55.8 90 42.2
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.2e-06 55.8 118 36.4
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 3.2e-06 55.8 113 34.5
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 5.5e-06 55.1 122 38.5
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 5.5e-06 55.1 105 36.2
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 5.5e-06 55.1 108 39.8
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 9.3e-06 54.3 114 36.0


User provided reference genes

Program Settings