Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-98 362.1 181 100.0
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.6e-98 360.9 181 99.4
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-95 351.7 181 97.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 4.6e-84 314.7 186 90.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 9.7e-82 307.0 206 81.6
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.6e-55 219.9 185 67.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.5e-47 192.2 196 56.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.2e-45 184.5 129 76.0
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.4e-42 175.6 189 53.4
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.5e-42 174.5 186 52.7
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.4e-40 169.5 187 52.9
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.1e-40 168.7 183 53.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.0e-40 167.9 188 50.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 9.2e-40 167.5 181 52.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.7e-39 166.0 188 52.1
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.5e-39 165.2 186 51.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.5e-39 165.2 190 51.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.3e-38 163.7 188 50.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-38 163.7 184 51.6
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.3e-38 163.7 184 51.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-38 163.3 190 51.1
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.3e-38 162.9 191 50.8
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.0e-38 161.8 191 50.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.6e-38 161.0 184 50.5
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.1e-37 160.6 187 50.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.9e-37 159.8 187 49.2
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-36 156.4 195 49.2
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.2e-34 150.6 183 48.6
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.9e-33 146.0 179 45.8
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.3e-33 144.4 178 44.9
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.4e-32 142.9 174 44.8
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 3.2e-32 142.5 174 44.3
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 4.1e-32 142.1 172 45.9
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.4e-32 141.7 173 50.3
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.6e-31 140.2 171 43.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.7e-31 139.4 172 44.2
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.6e-31 138.7 175 42.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.0e-30 137.5 178 44.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.3e-30 136.3 174 43.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.0e-30 136.0 176 43.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.9e-30 135.6 169 45.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.9e-30 135.6 170 46.5
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.0e-30 135.2 170 44.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.0e-30 135.2 174 44.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 5.0e-30 135.2 173 44.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.0e-30 135.2 175 44.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.6e-30 134.8 175 44.0
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 6.6e-30 134.8 174 43.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 6.6e-30 134.8 175 41.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.6e-30 134.8 178 41.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.1e-29 134.0 171 42.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.5e-29 133.7 187 42.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-29 133.7 173 43.4
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-29 133.7 180 41.7
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.5e-29 133.7 171 43.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.5e-29 133.7 177 43.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.9e-29 133.3 171 43.9
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.9e-29 133.3 165 44.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.5e-29 132.9 171 43.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 5.6e-29 131.7 176 43.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-29 131.7 166 44.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.3e-29 131.3 171 43.9
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.2e-28 130.6 164 45.1
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.2e-28 130.6 174 42.0
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.6e-28 130.2 169 40.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.1e-28 129.8 172 41.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.1e-28 129.8 183 43.7
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.8e-28 129.4 175 42.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.8e-28 129.4 178 44.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.6e-28 129.0 171 43.3
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.6e-28 129.0 170 42.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 3.6e-28 129.0 172 41.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.7e-28 128.6 171 43.3
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.7e-28 128.6 172 41.3
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 6.2e-28 128.3 171 42.1
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 6.2e-28 128.3 171 43.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 8.0e-28 127.9 163 44.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.0e-28 127.9 170 43.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.4e-27 127.1 171 43.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.4e-27 127.1 174 43.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.4e-27 127.1 167 44.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.3e-27 126.3 171 41.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.3e-27 126.3 175 41.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 4.0e-27 125.6 176 42.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.2e-27 125.2 174 44.3
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 6.8e-27 124.8 120 56.7
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 8.9e-27 124.4 171 41.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-26 124.0 164 43.3
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-26 124.0 178 43.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-26 124.0 178 42.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.2e-26 124.0 179 40.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.2e-26 124.0 171 42.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.6e-26 122.9 171 41.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.6e-26 122.9 188 41.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.5e-26 121.3 170 41.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.8e-26 120.9 178 42.1
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-25 120.6 151 49.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.2e-25 119.8 178 42.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.9e-25 119.4 171 39.2
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.9e-25 118.6 154 46.1
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 4.9e-25 118.6 165 43.0
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 4.9e-25 118.6 121 51.2
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 8.3e-25 117.9 121 51.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-24 117.5 173 41.6
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-24 117.5 131 48.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.4e-24 116.3 171 41.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.1e-24 115.5 195 36.4
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.2e-23 114.0 128 47.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 7.8e-23 111.3 181 39.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.0e-22 110.9 86 65.1
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-22 110.5 108 53.7
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.3e-22 110.5 174 37.9
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.3e-22 109.8 132 46.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.0e-22 109.4 118 49.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.1e-21 107.5 246 32.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.9e-21 106.7 206 34.5
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.3e-21 105.9 172 37.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 7.3e-21 104.8 134 44.8
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 9.5e-21 104.4 172 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 8.1e-20 101.3 163 35.0
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.0e-19 99.0 171 35.7
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-18 97.1 153 38.6
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.4e-18 95.9 121 45.5
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.4e-18 95.5 226 31.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-17 92.4 168 36.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.1e-16 90.9 122 41.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.2e-16 89.4 152 37.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.1e-16 89.0 155 36.8
BcaB05g24541 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-12 77.0 47 83.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.6e-12 75.9 135 38.5
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 4.7e-12 75.5 56 60.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-11 74.3 130 36.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.4e-11 73.9 121 38.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.0e-11 72.4 121 42.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.0e-10 70.1 84 44.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.4e-10 69.3 128 34.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 5.8e-10 68.6 94 42.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.9e-09 66.2 124 37.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.8e-09 65.9 180 30.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-07 60.8 56 50.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.5e-07 59.3 50 54.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.9e-06 55.8 50 50.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 5.1e-06 55.5 50 50.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 6.6e-06 55.1 50 48.0


User provided reference genes

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