Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.8e-86 322.0 176 100.0
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 9.4e-82 307.0 176 96.6
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 9.4e-82 307.0 176 96.6
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 1.6e-81 306.2 176 95.5
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 1.6e-81 306.2 176 95.5
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-74 283.1 177 91.0
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 2.5e-74 282.3 155 100.0
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-61 238.8 181 75.7
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-61 238.8 181 75.7
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 7.0e-61 237.7 180 76.7
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.6e-60 236.5 180 76.1
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 7.8e-60 234.2 183 77.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.3e-59 233.4 181 76.2
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-58 229.6 181 72.4
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.0e-56 221.9 181 71.8
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.8e-56 221.1 182 70.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.8e-56 221.1 182 70.9
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-55 219.2 182 70.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-55 219.2 182 68.1
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.6e-55 219.2 182 70.3
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 5.2e-48 194.9 180 68.3
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.3e-42 175.6 185 61.6
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 6.2e-41 171.4 183 57.4
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 6.2e-41 171.4 183 57.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 6.2e-41 171.4 183 57.4
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.6e-39 166.0 183 58.5
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.6e-39 166.0 185 56.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.8e-39 164.9 182 55.5
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.8e-39 164.9 182 55.5
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 9.9e-39 164.1 184 56.0
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 3.5e-36 155.6 183 59.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 8.6e-35 151.0 122 75.4
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 3.6e-33 145.6 180 48.3
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 3.6e-33 145.6 180 48.3
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-32 143.3 131 67.9
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.1e-32 142.5 180 47.8
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.1e-32 142.5 180 47.8
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 9.9e-31 137.5 199 50.3
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.9e-30 136.0 82 79.3
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.1e-28 129.8 184 48.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.7e-28 129.4 185 50.8
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.6e-28 128.6 196 50.0
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.0e-27 127.5 176 52.8
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 5.6e-26 121.7 82 80.5
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-22 110.2 181 42.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.9e-22 108.6 74 75.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 8.7e-19 97.8 200 40.5
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 3.3e-18 95.9 190 45.8
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.3e-18 95.5 191 46.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 9.6e-18 94.4 199 42.2
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.3e-17 94.0 169 46.2
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.3e-17 94.0 188 45.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.6e-17 93.6 188 44.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.6e-17 93.6 186 39.8
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.6e-17 93.6 205 42.4
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-17 93.2 175 44.0
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.8e-17 92.8 196 40.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.8e-17 92.8 196 40.3
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 2.8e-17 92.8 139 49.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 2.8e-17 92.8 195 40.0
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.8e-17 92.0 182 40.1
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 8.1e-17 91.3 190 44.7
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 8.1e-17 91.3 181 39.2
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 8.1e-17 91.3 202 44.6
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.1e-16 90.9 202 44.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.4e-16 90.5 188 39.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.8e-16 90.1 191 39.8
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.8e-16 90.1 201 38.8
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.8e-16 90.1 176 42.0
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.4e-16 89.7 183 42.1
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 3.1e-16 89.4 181 39.8
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.1e-16 89.4 188 41.0
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.5e-15 87.0 184 38.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 184 39.1
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.6e-15 86.3 199 43.7
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.6e-15 86.3 137 45.3
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.4e-15 85.9 198 40.9
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.4e-15 85.9 178 39.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.4e-15 85.9 149 47.7
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.4e-15 85.9 200 42.0
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 5.8e-15 85.1 204 34.8
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 9.9e-15 84.3 182 39.0
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-14 84.0 197 38.6
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 2.2e-14 83.2 198 40.9
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.9e-14 82.8 168 36.9
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 3.8e-14 82.4 185 35.1
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 6.4e-14 81.6 187 36.9
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 6.4e-14 81.6 191 38.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.4e-13 80.5 192 38.5
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.4e-13 80.5 123 44.7
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.9e-13 80.1 187 37.4
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 2.4e-13 79.7 192 38.5
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 3.2e-13 79.3 211 36.5
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 3.2e-13 79.3 186 35.5
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 4.2e-13 79.0 189 36.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.2e-13 79.0 185 35.1
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 5.4e-13 78.6 194 41.2
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 7.1e-13 78.2 188 39.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 9.3e-13 77.8 163 38.0
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 9.3e-13 77.8 172 39.0
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.2e-12 77.4 203 36.0
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 178 44.4
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.7e-12 76.3 132 47.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.7e-12 76.3 186 35.5
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.5e-12 75.9 187 38.5
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 4.6e-12 75.5 189 34.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 4.6e-12 75.5 183 37.2
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 7.9e-12 74.7 187 39.0
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.9e-12 74.7 183 37.2
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.0e-11 74.3 182 40.1
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.3e-11 73.9 191 36.6
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.3e-11 73.9 178 36.5
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.8e-11 73.6 74 59.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.8e-11 73.6 185 37.8
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.8e-11 73.6 78 56.4
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.8e-11 73.6 173 37.0
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 5.1e-11 72.0 179 36.3
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 5.1e-11 72.0 194 35.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 5.1e-11 72.0 186 38.2
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 6.7e-11 71.6 180 37.8
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 6.7e-11 71.6 178 39.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-10 70.9 84 53.6
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.9e-10 70.1 190 36.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.9e-10 70.1 81 51.9
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.9e-10 70.1 165 40.6
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 2.5e-10 69.7 204 37.3
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-09 66.2 199 34.7
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-09 66.2 179 36.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.8e-09 65.5 121 40.5
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 6.2e-09 65.1 167 41.3
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 8.1e-09 64.7 173 32.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 8.1e-09 64.7 195 34.4
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 8.1e-09 64.7 183 32.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 8.1e-09 64.7 79 46.8
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.4e-08 63.2 193 34.7
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 4.0e-08 62.4 134 38.1
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 4.0e-08 62.4 174 35.6
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.3e-08 62.0 178 37.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.5e-07 60.5 77 50.6
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-07 60.1 181 33.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-07 60.1 184 38.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 7.6e-07 58.2 170 35.3


User provided reference genes

Program Settings